Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq20354 123 4e-23 >seq20354 Length=4240 Score = 123 bits (136), Expect = 4e-23 Identities = 162/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| ||| || || |||||| || ||||| |||||||| || || ||||| | Sbjct 1547 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 1488 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||||||||| || || || |||||||| || || || || ||||| | Sbjct 1487 TCAGCCAGAAGATGGACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACG 1428 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGG 50158 | || | | ||| ||| | ||||||| || ||||| || | ||||| || | Sbjct 1427 CGACGATGCGCTCGCCAAATGTGGCGCTCCGGTTGCCGATCCAGTTCAGTGCCCAGTCTG 1368 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 | ||| | || | || |||||||| || | ||| || || ||| Sbjct 1367 CTTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAACAGA 1324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716432581726240