Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq20354 111 2e-19 seq1065 93.3 6e-14 >seq20354 Length=4240 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || || ||||| |||||||||||||| ||||| |||||| ||||||| ||| Sbjct 1424 GTCGCGTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGATCGTTTGCGTCCATCTTCTGG 1483 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||||| |||||||||||||| || || ||| |||||| | || ||||||| Sbjct 1484 CTGAAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGAGAC 1543 Query 125550 GAGG 125553 |||| Sbjct 1544 GAGG 1547 >seq1065 Length=2691 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| || | | ||| ||||||| || || |||||||| || |||||| Sbjct 933 CTGTGGTACGCCATCCTGGAGTCGCAGATAGAGACGGGCACCCCGTACATGCTGTACAAG 992 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || || |||| |||||| || | |||||||||||| || ||| ||| Sbjct 993 GATGCCTGCAACAGCAAGTCCAACCAGAAGAACCTCGGCACCATCAAGTGCAGCAACCTG 1052 Query 97299 TGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| || | || |||||| | | ||||||||| Sbjct 1053 TGCACCGAGGTCGTCGAGTACACTGCGCCGGACGAG 1088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739164719208160