Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq5422 111 8e-20 >seq5422 Length=1306 Score = 111 bits (122), Expect = 8e-20 Identities = 286/430 (67%), Gaps = 23/430 (5%) Strand=Plus/Minus Query 46688 CACTGTCTTTGAGGCGTGGTC-GCGC-GTCATGTCCGATGTGCAGGCCATCTCCAAGGAC 46745 ||| ||| || |||| | || |||| |||||| ||| || |||| |||| ||||| Sbjct 960 CACCGTCATTCAGGCAT--TCAGCGCAGTCATGGACGAGGTACAGGGCATCGCCAAGCGT 903 Query 46746 TCCCGCAACGAGCAGCAGCACTTCAACTTCCGCGGCATCGACGCTGTCATGAACGTGGTG 46805 |||||||| |||||| ||| ||||||||||||||||| |||||| || Sbjct 902 GACCGCAACGCCCAGCAGGGGTTCGTGTTCCGCGGCATCGACGCCACGATGAACACCGTC 843 Query 46806 GGACCGGCGCTGCGCGCGCACGGCGTCACGGTCATCCCGCGCGCC--GTCGAGGAATACT 46863 || || || ||||| |||||| ||| ||||||| |||| ||||| | || Sbjct 842 GGCCCCGCCCTGCGAAAGCACGGTGTCGTCATCATCCCCGACGCCATGTCGATCGA--CT 785 Query 46864 CGGAGCGCTACGAGACGCAGCCCCGCGGCAACCGCCCCGGCACCCCGATGATCAACCGCC 46923 | ||||| ||| ||||| || | | | |||| ||||| ||| | Sbjct 784 CCGAGCGGTACCAGACG----------GCTAAGGGCG-GGCA----GATGAAGAACGCCA 740 Query 46924 TTGTCCGGGTGGAGTTCACCGTCTTCGGGCCTCGCGGCGACTGGTTCGCTGGCACTACCT 46983 |||| || | |||||| | ||| || || ||| | ||| | || || | Sbjct 739 CCGTCCACATGCGCTACACCGTTTACGGCCCGGAGGGTGACAGCTTCACCGGATGCACGT 680 Query 46984 ACGGTGAGGCCGCCGACTCGGGCGACAAGGCGATGTCCAAGGCTCACAGCGTGGCCTACC 47043 |||| || || || ||| | |||||||||||| | ||||| || ||| || |||| Sbjct 679 ACGGGGAAGCAGCGGACGCTGGCGACAAGGCGGTCAGTAAGGCGCAGTCCGTCGCGTACC 620 Query 47044 GGACATTCCTGTTGCAGGCCCTGACCATCCCCACCGACGAGCCCGACCCCGACGAGGATG 47103 | || |||||| |||||| ||||| | || || | |||| ||||||||||| ||| Sbjct 619 GCACGTTCCTGCTGCAGGGACTGACGGTGCCGACGCAGGAGCGCGACCCCGACGCGGACT 560 Query 47104 TGCACGAGCG 47113 ||||||||| Sbjct 559 CGCACGAGCG 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242249075997392