Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_004684.1 Length=67480 Score E Sequences producing significant alignments: (Bits) Value seq133315 309 1e-79 seq539 102 4e-17 seq70437 87.8 8e-13 >seq133315 Length=1321 Score = 309 bits (342), Expect = 1e-79 Identities = 553/793 (70%), Gaps = 32/793 (4%) Strand=Plus/Minus Query 17702 TTCCCCGTGGTGAAGGGCTACACCCTCCGCGCCACCAAGATCAACAACTGCGGTCGCCCG 17761 ||||| || |||| ||| || ||||||||||||||| |||||| ||||| | ||| Sbjct 1014 TTCCCGATGCTGAAAGGCATCAAGCTCCGCGCCACCAAGGTCAACAGTTGCGGGCTCCCC 955 Query 17762 GAATCCGGCGCGGCCAACCGCCTCGTCACCGAAGGCTTCGTCAGCTTCAACCTGTCGCCG 17821 | ||||| | |||| || |||||| || ||||| ||||| |||| || Sbjct 954 GTCGAGGGCGCCGGCAACTATCTGACCACCGACGGTTTCGTGTCGTTCAAAATGTCCCCC 895 Query 17822 GAAATGAAGGCGGCTGAGCAGCTGGAGCAGACCAACGCCGCTGGCA-AGGTGTGCGTCAC 17880 | ||||||| || | || | |||||| ||||| || || | |||||||| |||| Sbjct 894 AACATGAAGGACGCGAACGAGATCGAGCAGGAGAACGC-GCAGGGACAGGTGTGCATCAC 836 Query 17881 CGACCGCACGCCGCCTGAGCGCAAGTGGTGGAACATCGAGGCCACCCTGTGCAACGTCAA 17940 ||||||||| ||||| ||||||||||||| || ||||| |||||||| || || Sbjct 835 CGACCGCACCCCGCCCGAGCGCAAGTGGTACGACCTCGAGCTGGCCCTGTGCGGGGTGAA 776 Query 17941 CACCGAACTCATCACCCTGTTCACCGGGTGGGAGCAGGTTGTCGACTTC---GCCGACCT 17997 | |||| || |||||| || ||| || |||| |||||| ||||||| | | |||| Sbjct 775 CTCCGAGCTGATCACCATGCTCAACGCGTGGAAGCAGGAAGTCGACTACAAGGGCGAC-- 718 Query 17998 GCCTGTCGGTATCCGTGACAAGGCTGAGGTCGATGGCGACTACGGCGTGGCGTTGGAGGT 18057 | ||||| |||| ||| || ||||| |||||||| ||||| |||| | Sbjct 717 -TCGGTCGGCTTCCGCGACCAGAAGCGCGTCGAATCGGACTACGGTGTGGCCCTGGAAAT 659 Query 18058 CTGGACCGGCGGCGAAGGCGAGGACGACTGCCCGGTGCCGACCACGGACTCGATCTTCTC 18117 ||||||||||||| | | ||| ||||| ||||| || ||| ||| || ||| | Sbjct 658 CTGGACCGGCGGCAAGGCCGACGACGATTGCCCCACCCCCACCGGCGACGATATTTTCGC 599 Query 18118 GGTGGCCACCTCCGGTAAGCAGTACGGCTACCTGCTGCTGGGCGGCAAGGAGTTCACGCT 18177 | ||| ||||| || |||| || ||||||||| | | |||| ||||||||||| Sbjct 598 CACGAGCACGTCCGGCAAAAAGTATGGGTACCTGCTGACGTGGGGCACCGAGTTCACGCT 539 Query 18178 CGGCAACATCGA--AATCGGCG--CGTCGGTGTCCACGTTCACCATCTCGGGTATC---- 18229 |||| |||| || | |||| ||||| ||| |||||| ||||||| ||| Sbjct 538 CGGCGACATTGAGGTACAGGCGGACGTCG----CCAACTTCACCCTCTCGGGCATCAGCA 483 Query 18230 TCGCTGGCCATGCCGCACTGGGGCAAGGGTCCGTACAACGTGGCCGCCATCGACGGCAAC 18289 |||||||| ||||| ||||| || |||| || || | ||||||||| | | || Sbjct 482 TCGCTGGC----CCGCAGTGGGGTCGTGGCCCGTGGAATGTTGTCGCCATCGATGACGAC 427 Query 18290 GGCACGCCCGGCCGCCTGCTGGCACCGACCGGCAAGA--AGGAGCACATCACCCTGTTCC 18347 |||| | ||||| ||| | | || |||| | || | |||| ||| ||| | Sbjct 426 AACACGGCTGGCCGTCTGATCACTCC-TCCGG-ATGATGACCAGCATTTCATTCTGCAGC 369 Query 18348 GCACGCCGGTGCCGCCCCCGGAGCCG--ACCGGCGGCGCGGTGCCGCTCGACATCACCGG 18405 |||| ||| | |||| |||||| || |||| | || | | | ||| ||||||||||| Sbjct 368 GCACCCCGATCGCGCCGCCGGAGTCGACACCGTCCGC-CTGCG-AGCTGGACATCACCGG 311 Query 18406 CAAGTTCCAGGGCACGACCTACTACTTCGGCGGCCCGGCGGGCGCACCGGCGGCCGACGT 18465 || |||||||| || || ||||||||| || |||| || |||||||| || || || Sbjct 310 CACGTTCCAGGATCCGGACTTCTACTTCGGTGGGCCGGAGGATGCACCGGCTGCTGATGT 251 Query 18466 GGCTCCCGAGCAG 18478 ||| || || ||| Sbjct 250 GGCGCCGGATCAG 238 >seq539 Length=1209 Score = 102 bits (112), Expect = 4e-17 Identities = 240/356 (67%), Gaps = 16/356 (4%) Strand=Plus/Minus Query 11567 CCCCGCAACCACAGCGGCTACCGCGAGTTCCACACCAGCCCGCCGGTGCGCCTGGACGAC 11626 |||| | ||| | ||||||| | | ||||||||| ||| |||||| || ||| || Sbjct 952 CCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGATGCTCGACAAC 893 Query 11627 GGC-ACCGAGCTGGCCGTCGGCCGCCTGACCGTCGGCATCGGCCACGCCAGCACGGCGGC 11685 || |||| || |||||||| | || ||||| |||| ||| || ||| | || Sbjct 892 GGTGACCGT-CTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGGTCG----- 839 Query 11686 CAACGTGACCGCCGCGCAAGCAGCTGCG---CACTACGACAACGCTGACGCCTGCTGGGC 11742 || | || |||| || || || || |||||||||||| | | | |||||| || Sbjct 838 -AAAG---CCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTTCGC 783 Query 11743 GTTGGTCCGGGTAGGCGAGGACGCCTATGGCATCTGGTTCTCCGGTGTGGTGGCCCCGTG 11802 | ||||| | ||||| |||| | ||||||||| | || || |||| || || | Sbjct 782 CCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCACCTGG 723 Query 11803 GGCCGACCAGGCCACCGTGGA-GAAGGGCGCGAGCGCGCCGCTGTCCGGCGACTGGCGCG 11861 | ||| | ||| || | | |||| || | || || ||||||| || ||||| Sbjct 722 CACTGACAGCGAAACCCTGCAGGCCGGGCTCGCG-GCACCCTTGTCCGGGGATTGGCGGC 664 Query 11862 ACTTCGGCAACGGGTACGAACTCGTGGCGGCGCTGGCGGTGAACACACCGGGATTC 11917 | ||||| | | || ||||| || || || ||||||||||||||||| ||| Sbjct 663 AGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTC 608 >seq70437 Length=1356 Score = 87.8 bits (96), Expect = 8e-13 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 10894 CTTCCGCACGTTCACCGACGCGGTGATCGCGCTGGTCGGTGAACCCACCAGCGACGGGCG 10953 || ||| |||||||||||||| |||| || |||| ||||| ||||||||| Sbjct 459 CTACCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCG 400 Query 10954 CATGCTCAGCCGCG-ACATCGACTTGTCGATGCGCACCTTTCCGCACCCGCTGATGTGGC 11012 ||||||| || || |||||||| | | | |||| ||| || | |||||||||||| Sbjct 399 CATGCTC-GCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGG 341 Query 11013 AGGAGCAGACCGACCACGGACACGGCGGCAGTTACGTCATCGGCGTGGTGGAGGACGCCC 11072 | ||||||||| | |||||||| | | ||| ||||||| | || | ||| | Sbjct 340 TGAAGCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCAC 281 Query 11073 GTCTGGAGGACGGCAAGGTGCTCGGTTCGGGCTACCTGCTCAACA 11117 || | || | || | | |||| || || || |||||||||| Sbjct 280 GTGTCGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACA 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 215273282221316