Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq112114 82.4 6e-11 >seq112114 Length=2115 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||| || || |||||||| || | || || ||||||| || ||| Sbjct 1954 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGTTGC 1895 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||||| || | | |||||||||| ||||| Sbjct 1894 TTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGGATTTTG 1835 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | ||||| ||| | | ||| ||||| || || || || || ||| Sbjct 1834 GCCTTGACGTTTTCGATGGTGTCGCTCGGCTCAACCTCGAGCGTGATCGTCTTGCCAGTG 1775 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 1774 AGGGTCTTGACGAAGATCTGCAT 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420201215060516