Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq132376 156 5e-33 >seq132376 Length=11941 Score = 156 bits (172), Expect = 5e-33 Identities = 245/345 (71%), Gaps = 7/345 (2%) Strand=Plus/Minus Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCA 6759 |||| |||| ||| | | |||| |||||||||||||||||||| | |||||||| | Sbjct 1145 GGATATGGATCATATTGTTCTAATTTAAAATCTTCAAATTTAAAATTAAATAAATTAGTA 1086 Query 6760 GACtttttttttAATAT-TACAACAGGTGAAGGTTTTATTGATCGAGTTAATTGTTCTTT 6818 | ||||| |||||| || || ||| | | |||| | || | |||||||||| || Sbjct 1085 -ATATTTTTATTAATAACTAAAATTGGTAATGATTTTGGTTTTCTACTTAATTGTTCATT 1027 Query 6819 TATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACC 6878 || | | ||||| ||||||||||||||| |||| || ||||||||||| || Sbjct 1026 AATTTGTGAAAAATGATTACTATAAATATGAGCATCACCTAAAGTGTGAATAAATTCTCC 967 Query 6879 TGGTTTCATATCAACA-GCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACAT 6937 | | ||| | ||| ||| || | | ||||||||||||||||||||| | || Sbjct 966 T-AACTGATAGCCACATATTTGTGCTAACATTATTGTTAATAATGCATAAGAAGCAATAT 908 Query 6938 TAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATAT 6997 ||||||| || ||||| |||||||| | |||||| ||||||||||||| | | Sbjct 907 TAAAAGGAACTCCTAAAAAAATATCTGCACTACGTTGATATAATTGACAAGATAATTTTT 848 Query 6998 TGTCTATAG---CATAAAATTGACACAATACATGACATGGAGGTA 7039 | || || | ||||||||| || ||||||||| |||| Sbjct 847 TATCATCAGAAACGTAAAATTGAATTAAAGTATGACATGGTGGTA 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594348683025600