Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq116809 167 4e-37 seq175268 96.9 5e-16 >seq116809 Length=7987 Score = 167 bits (184), Expect = 4e-37 Identities = 184/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| || ||||| |||||||| |||||||| ||||| || || Sbjct 2316 CGCCAAACGTCATCGCAAGGTGCTCCGAGACAACATCCAGGGAATCACAAAGCCCGCCAT 2257 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||| |||||||| ||||||||| ||||||| || |||| || |||| Sbjct 2256 TCGTCGTCTGGCTCGCCGTGGTGGCGTCAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 2197 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || | ||||| ||| ||| |||| || || || ||| || || Sbjct 2196 CCGAGGCGTGCTCAAAGTTTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 2137 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || || || |||||| ||||||| ||||||| || ||||| | ||||| Sbjct 2136 ACACGCCAAGCGAAAAACGGTCACCGCCATGGACGTCGTCTACGCGCTGAAAAGACAAGG 2077 Query 16672 CCGTA 16676 |||| Sbjct 2076 ACGTA 2072 >seq175268 Length=1794 Score = 96.9 bits (106), Expect = 5e-16 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 16474 AATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 || ||||||||| || |||||||| || || || || || || |||||||| | || || Sbjct 382 AAACACCAAGCCTGCAATCCGTCGCCTAGCACGCCGCGGCGGTGTCAAGCGCATTTCCGG 323 Query 16534 ATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA 16593 | |||| ||||||| || | || | ||| |||| || ||| ||| |||| || Sbjct 322 CCTCATCTACGAAGAGACCCGCGGCGTCCTCAAGGTCTTTCTGGAGAACGTCATCCGCGA 263 Query 16594 TGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTA 16653 ||| || ||| ||||||||||| || | ||||| || || |||||||| | || || Sbjct 262 TGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTGACGGCCATGGATGTGGTGTA 203 Query 16654 TGC 16656 || Sbjct 202 CGC 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78888209589588