Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_007052.1 Length=45861 Score E Sequences producing significant alignments: (Bits) Value seq182204 275 2e-69 >seq182204 Length=8499 Score = 275 bits (304), Expect = 2e-69 Identities = 676/1011 (67%), Gaps = 53/1011 (5%) Strand=Plus/Minus Query 25892 ATCACCGTTGAAAATAGAGTTTCTAACAATAACATAATCTACAGTACGT-AATGATTTCA 25950 |||||| || ||||| | |||||||||||||||| ||| | || |||| | Sbjct 3020 ATCACCATTATTAATAGTACCTTTAACAATAACATAATC-ACATTTTGTTAATGCAGATA 2962 Query 25951 AGTCTTTTCCACCGGCATATGAAATTGAGCTTTGTAAATCTTGTTGCATTTCTTTTAAGG 26010 | ||||| || || ||||| ||||| | ||||||||||| || ||||||||| | | Sbjct 2961 AATCTTTACCGCCAGCATAAGAAATAGCAGATTGTAAATCTTCTTCCATTTCTTTATAAG 2902 Query 26011 TATCCATTAATGACCCCTTATGTTCTACAAACAtttttttACCTTCTACATTTTTATGTT 26070 |||| | ||| || |||| | |||| |||||||||||||| | |||||| || Sbjct 2901 TATCAGCAATTGAACCTTTATATGGAACAAGTATTTTTTTACCTTCAATATTTTTCGCTT 2842 Query 26071 CGCCTTTTTGAAATTCAGATGCACTACCAAAATATTCTTTATACTGTTTACCATCAAGTT 26130 | |||| | ||| | ||| |||||||||||||| || || ||||| | | Sbjct 2841 CCGCTTTGTTAAAAATACTTGCTGATCCAAAATATTCTTTGTAAGATTGACCATTTATTG 2782 Query 26131 CTACAGTTTCACCAGGTGATTCTTCGTGTGCCGC--AAATAATGAACCAATCATGACCAT 26188 ||| ||| ||||||||||| || | |||| ||||| | || ||| | ||| Sbjct 2781 TAACAATTTTGCCAGGTGATTCATCATAACCCGCTAAAATACT--TCCTGCCATAATCAT 2724 Query 26189 TGATGCACCAAATCTAATTGACTTAGCGATGTCGCCATGCGTTCTTATGCCACCATCGGC 26248 | |||||||| |||| ||||| || || |||| ||| || |||||||| || Sbjct 2723 AGTGGCACCAAAAGCTATTGCTTTAGCAATATCACCATTACATCTAATACCACCATCTGC 2664 Query 26249 AATCAAAGGTTTACGAGCTGC--TTTACTACATATGTTTAATGCCGCTAACTGCCAACCA 26306 ||| || |||||| | | ||| || | |||| | | ||| || ||| || |||||| Sbjct 2663 AATTAATGGTTTA-GTGGTGCTATTGGCAACATCT-TGTAAAGCATTTAATTGTCAACCA 2606 Query 26307 CCAGTACCAAAACCTGTTTTAATCTTTGTAATACAAACTCTACCAGGACCTATACCGACT 26366 || |||||||| || ||||| | || ||||||||| || | || ||||| | ||| | | Sbjct 2605 CCTGTACCAAATCCAGTTTTTAGTTTAGTAATACAAGCTTTTCCTGGACCAACACCAAAT 2546 Query 26367 TTGGTAGCATCAGCACCAGCATTTTCTAATTCTCTAACACC---TTCTGGCGTACCAACA 26423 || | |||||||| || |||||||| ||| ||||| | || || | | ||| Sbjct 2545 TTAATTGCATCAGCGCCTCATTTTTCTAAATCTTTAACAGCGGTTTTTGTCAT---AACG 2489 Query 26424 TTACCAGCAATAACAAAACTATCAGGTATATG-------------GGTTTTAATATGTTT 26470 ||||||||||||| |||| | | |||| || |||||| ||| ||| Sbjct 2488 TTACCAGCAATAATAAAAGGTTTA-GTATTTGTTTTAGCAAAAGTGGTTTTTATAAATTT 2430 Query 26471 AATCATGTTTATCACTGAATCTGAGTGACCATGCGCAATATCTATTGTAATATATTCGGG 26530 |||||| | | || | || |||||||| |||||||| || |||||| |||| || Sbjct 2429 AATCATTTCTTCCATAGCATTACTATGACCATGAGCAATATCAATAGTAATAAATTCAGG 2370 Query 26531 GATTA-ATTTTTCTTGAGCTAACTTTTCAATAAAATCAAATTCCGCTTTCTTTACACCAA 26589 |||| ||| |||| ||| | ||||| || || ||| |||| || ||||||| Sbjct 2369 AATTAGATTCAGTTTGA-TTAATTGTTCAAGTAACTCTTTATCCTCTTTTTTAACACCAA 2311 Query 26590 CTGAAATAGATGCAAATAAGCCTGAATTTTGCATATGTTTTATAAAAGGTATTCTTGCTT 26649 ||| || ||| |||| | | ||||||| ||| ||||| | | || | Sbjct 2310 TGCTAATTGAAGCATATAATTTTTGTTCATGCATATTTTTAATAAA---TTTAATTTGAT 2254 Query 26650 CTTCATCAAAACGATGCATGATATAAAAGTAATCATTTTCAGCAAACCATTTCGCTAATT 26709 | || |||||| ||||| | ||||||||||| ||||| ||| || || | ||||| Sbjct 2253 CGATATTAAAACGGTGCATTACATAAAAGTAATTATTTTTAGCCAATCAAATACATAATT 2194 Query 26710 TCTCATTCATAACTGTTTGCATATTTGCAGGAACTACAGGTAGCTTGAATTTT----TTC 26765 | || || || | ||||||||| |||| || | ||||||| | Sbjct 2193 CTTGGTTAATGACAGCACTCATATTTGCCGGAA-------TAATTGGAATTTTAAAAGTA 2141 Query 26766 GGACCA---AATTGGATAGTTGTATCACATTCTGATCTACTCTCAACTATACATTTATTA 26822 |||| | || | | | |||||||||||| || | |||||| | |||||| Sbjct 2140 AAACCATTTAGTTTAACACTGGTATCACATTCTTTTCGCGATTTAACTATTCCTTTATTT 2081 Query 26823 GGTATTAATTGAATATCTTCATAGTCAAAT---ATTTTCA-TTTTTATTTA 26869 | |||| | ||||||||| | |||||| | |||| |||||||||| Sbjct 2080 GCAATTAGATTTATATCTTCAAAATCAAATTTCACATTCATTTTTTATTTA 2030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146277481606616