Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq112114 131 2e-25 seq1065 96.9 3e-15 seq20354 91.5 1e-13 >seq112114 Length=2115 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 1751 GCCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1692 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| ||| |||| | ||| |||||||| || || Sbjct 1691 CAAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 1632 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||| | | || | || ||| | | ||| | Sbjct 1631 GATCCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCAC 1572 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| || | |||||| ||||| || ||||| ||||| |||||||||||| Sbjct 1571 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCATGACT 1520 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||| || | || | ||| ||||| || || |||||||| || Sbjct 1979 GCCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 1920 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| || |||||||| ||| |||| | ||||||||| ||||| || Sbjct 1919 CAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGG 1860 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||||| | || | || ||| | | ||| | Sbjct 1859 AATCCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGCTCGGCTCAAC 1800 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| || | || || || || || || || ||||| ||||||||| || Sbjct 1799 CTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCT 1748 >seq1065 Length=2691 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/174 (74%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | |||| ||||| ||||| ||||| || |||||||| || || || | ||| | Sbjct 1074 TGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTGGT 1015 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || |||||||| || |||||||| ||||||||||| ||| ||||| | ||||| Sbjct 1014 TGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCCCGTCTCTATCTGCG 955 Query 145788 TCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACCTGCTGCTGGTAGCG 145839 ||||| ||| || || || | |||||| ||||||| || ||||||| Sbjct 954 ACTCCAGGAT--GGCGTACCACAGCTGCTGCGCCTGCACCTGGCGCCGGTAGCG 903 >seq20354 Length=4240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 46101 GAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTAT 46160 |||| | |||||||| |||| |||||| || | | | ||| || || | |||||| || Sbjct 1363 GAAAGCAGACTGGGCACTGAACTGGATCGGCAACCGGAGCGCCACATTTGGCGAGCGCAT 1422 Query 46161 GGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTA 46220 || || |||||| || |||||| |||| || || || ||||| ||||||| | Sbjct 1423 CGTCGCGTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGATCGTTTGCGTCCATCTTCTG 1482 Query 46221 CATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGA 46280 | || | ||| ||||||||||||| || || ||||||||||| || || || Sbjct 1483 GCTGAAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGAGA 1542 Query 46281 CGAGG 46285 ||||| Sbjct 1543 CGAGG 1547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470806122877440