Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_008195.1 Length=70654 Score E Sequences producing significant alignments: (Bits) Value seq70437 127 9e-25 seq133315 123 1e-23 seq539 118 5e-22 >seq70437 Length=1356 Score = 127 bits (140), Expect = 9e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 8819 CTTCCGCACGTTCACCGACCAGCCCATCGCCTTCGTCGGCATCGAGACCAGCGACGGCCG 8878 || ||| |||||||||||| || |||| | |||||| | ||| |||||| || Sbjct 459 CTACCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCG 400 Query 8879 GATGTTGGCCACCGACATCGAGTTCAGCGTGCGCACCCCGCCGCTGCCGATGATGTGGAC 8938 ||| | || | |||||||| ||| | | |||| | || |||||| |||||||| Sbjct 399 CATGCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGT 340 Query 8939 CAAGCAGACCGGATACGGCCATGAGGACGCCTTCACCGTCGGCGTGCTGGAAAGCGCCCG 8998 ||||||||||| | ||| || || |||||| ||| |||||||| | ||| ||| || Sbjct 339 GAAGCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACG 280 Query 8999 TGTCGACGGCGACAAGGTGCTGGGGTCCGGCTACTGGCTGAACACCACCGAGGCCGACGA 9058 ||||||||||||| | || | |||||| || ||| ||||| |||||| |||| Sbjct 279 TGTCGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGA 220 Query 9059 GGC 9061 ||| Sbjct 219 GGC 217 >seq133315 Length=1321 Score = 123 bits (136), Expect = 1e-23 Identities = 233/342 (68%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 15636 GCAGGACAACGCCGAGGGCAAGGAATGCTTCACCGACCGGACGCCGCCCGAGCGCCGCTG 15695 |||||| ||||| |||| ||| ||| |||||||||| || |||||||||||| || Sbjct 868 GCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTG 809 Query 15696 GTACACCCCGGCCCTGGAGCTGTGCAACGTGAACACCGGTCTGCTGACCATGTTCACCGG 15755 |||| || | |||| |||||| |||||| ||| ||| | |||||| ||| || Sbjct 808 GTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGC 749 Query 15756 CTGGGAGTCGGTGCTTGACGCCAACGACCTGCCCGTTGGCTACCGCGACCAGAAGGAAAT 15815 ||| || || | ||| ||| | | | || |||| ||||||||||||| | Sbjct 748 GTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGT 689 Query 15816 CGAGACCGACTACGGCATCGCGCTGGAGCTGTGGACGGCCGGTAAGTCCGACGAGGACTG 15875 ||| | |||||||| | || ||||| | ||||| | ||| ||| ||||||| || || Sbjct 688 CGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTG 629 Query 15876 CGACGACATCCCCACCAGTGACGCGGTGTTCGCCGCTGCCGGGTCGGGCCGGAGCTACGG 15935 | || ||||||| | |||| | |||||| | | ||| ||| | || || Sbjct 628 ---CCCCACCCCCACCGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATGG 572 Query 15936 CTACTTCCTGTTCGGCGGCACCGAGTGGACCCCTGGCGACAT 15977 ||| | ||| | |||||||||| || | |||||||| Sbjct 571 GTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACAT 530 >seq539 Length=1209 Score = 118 bits (130), Expect = 5e-22 Identities = 291/433 (67%), Gaps = 24/433 (6%) Strand=Plus/Minus Query 9407 CGACGGGCACATCTTCGGTCACCTGGCGTGCTTCGGTGCGTGCCACCGCAGCATCCAGGC 9466 ||| || | |||| ||| ||||| || |||||||| || ||||| | || | Sbjct 1028 CGAGGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGA 969 Query 9467 TGAGTGCGTGGTGGCCCCGCGCAGCCGCACCGGCTACAGCATGTTCCACACCAGCCCGGC 9526 ||||||| ||| || | | || ||||||||| | ||||||||| ||| | Sbjct 968 CCAGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACC 909 Query 9527 CGTGCGCCTGGACGACGGCACCAGCCTGCCGGTGGGACGGCTCACTGTGGGCAGTGGCCA 9586 ||| || ||| |||| | | || || || || ||||||| ||||||| || || Sbjct 908 GGTGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCA 849 Query 9587 TGC--GCCCGACCACGTGAGCGGTCAGGTGGCGGCGGCGCACTACGACACCGCCGGTACC 9644 ||| | ||| | | || || | || || || |||||||||| | |||| ||| Sbjct 848 TGCCGGGTCGA--AAGCCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACC 791 Query 9645 TGCTTCGCCCTGGTGCGCGTGGGTGAGGACGCACACGGCATCTGGTTCAGCGGCGTGGCC 9704 ||||||||||| || |||| || || |||| ||||||||||||| | ||||||||| Sbjct 790 TGCTTCGCCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCC 731 Query 9705 GCGCCCTGGGCCACCGCCGAACAGATCGAGA---TG--GGCCTGGCCTCGCCGC-----T 9754 || ||||| ||| | |||| ||| | || |||| || ||||| || | Sbjct 730 GC-ACCTGG--CACTG----ACAG--CGAAACCCTGCAGGCC-GGGCTCGCGGCACCCTT 681 Query 9755 GTCCGGTGACTGGCGCGACTTCGGCCAGGGCCTGGAGCTGGTGGCGGCGCTGGCCGTGAA 9814 |||||| || ||||| | ||||| | ||||||| || || || || || ||||| Sbjct 680 GTCCGGGGATTGGCGGCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAA 621 Query 9815 CACGCCTGGCTTC 9827 ||| || || ||| Sbjct 620 CACACCGGGTTTC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225404766003740