Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_008197.1 Length=68427 Score E Sequences producing significant alignments: (Bits) Value seq539 129 3e-25 >seq539 Length=1209 Score = 129 bits (142), Expect = 3e-25 Identities = 301/441 (68%), Gaps = 21/441 (5%) Strand=Plus/Minus Query 8188 ATGGACCCCGACACGGGCCGGATATTCGGACACATCGCGTGCTTTGGTGCGTGCCACCGC 8247 || ||| |||| |||||| || ||||||| |||| ||||| || || ||||| | Sbjct 1036 ATCGACTCCGA---GGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCAT-GT 981 Query 8248 TCGGTGCAGA-ACGCGTGCGTCATGGCCCCGAAATCACCGTCGAACTACGCGCAGTTCCA 8306 ||| || || |||||| ||| || | || | | | |||||| || ||||| Sbjct 980 GGGGTTCACCGACCAGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCA 921 Query 8307 CACCTCGCCGCCTGTGCTGCTCGATGACGGCACCCGACTCGCCGTGGGCCGCCTGACCGT 8366 |||| | || || ||| ||||||| |||| ||| ||| |||| ||| | || ||||| Sbjct 920 CACCGCCCCACCGGTGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGT 861 Query 8367 CGGCACCGGGCATGCC--GACGAGCGGCTGCGTCCCGGCCCGGCCATGGCGCACTACGAC 8424 ||||||||||||||| | ||| | | || || | | ||| || ||||||||| Sbjct 860 GGGCACCGGGCATGCCGGGTCGAAAGCCCCCGCCCATG--CTGCCGCAGCCCACTACGAC 803 Query 8425 AACACCGGCGCGTGCTGGGCGCTGGTGCGTGCCTACG-AGACCAGCGTCGGAATCGAGGT 8483 ||||||||| | |||| || || || || ||| || |||| | | ||| ||| ||| Sbjct 802 AACACCGGCACCTGCTTCGCCCTCGTCCGCGCCGGCGAAGACGAAC-ACGGCATCTGGGT 744 Query 8484 GTCGGGCGTGGCCGCCCCGTGGGCCAC---CCCCGAGCAGATCGAGATGGGCCTCGCCTC 8540 ||||||||||||||| || ||| ||| | ||| | || || ||||| | Sbjct 743 GTCGGGCGTGGCCGCACC-TGG--CACTGACAGCGAAACCCTGCAGGCCGGGCTCGCGGC 687 Query 8541 GCCGCTGTCCGGCGATTGGCGGGATTTCG--GGCAGGGCCTCGACCTGATCGCCGCCTTG 8598 || ||||||| ||||||||| | ||| |||| | | || || |||||||| | Sbjct 686 ACCCTTGTCCGGGGATTGGCGGCAGATCGGCGGCA--ACTTGGAGCTCGTCGCCGCCCTC 629 Query 8599 AGCGTCAACACGCCCGGTTTC 8619 || ||||| || |||||| Sbjct 628 GCGGTGAACACACCGGGTTTC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218296128831888