Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_008199.1 Length=69059 Score E Sequences producing significant alignments: (Bits) Value seq133315 257 7e-64 seq539 138 5e-28 seq70437 134 6e-27 >seq133315 Length=1321 Score = 257 bits (284), Expect = 7e-64 Identities = 526/771 (68%), Gaps = 18/771 (2%) Strand=Plus/Minus Query 17280 CGTGCCACCAAGGTCAACTCTTGCGGGCTGCCGATCAGCGGTCCCGCCAACCGGATCGTG 17339 || ||||||||||||||| ||||||||| || || || ||| |||| ||| || Sbjct 987 CGCGCCACCAAGGTCAACAGTTGCGGGCTCCCCGTCGAGGGCGCCGGCAACT--ATC-TG 931 Query 17340 ACT---GACGGCTTCGTCACCTTCAACATCGACCCGGTGCTCAAGGACGCGGAGGAGCTG 17396 || ||||| ||||| | ||||| || ||| | ||||||||| | ||| | Sbjct 930 ACCACCGACGGTTTCGTGTCGTTCAAAATGTCCCCCAACATGAAGGACGCGAACGAGATC 871 Query 17397 TCGCAGACCAACGCGGCCGGTAAGGAATGCGTCACCGACCGCACTCCGCCGGAGCGGAAG 17456 |||| |||||| || ||| ||| ||||||||||||| ||||| ||||| ||| Sbjct 870 GAGCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAG 811 Query 17457 TGGTACAACATCCAGGCCGAACTCTGCGGTGTCAACACAGGCCTGATCACCCTGCTCAAC 17516 |||||| || || || | || ||||| || ||| | | ||||||||| |||||||| Sbjct 810 TGGTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAAC 751 Query 17517 GGGTGGCCGCAGATCCTCGACTACGACGACAACCCGATCGGTTTCCGCGACCAGAAGGAA 17576 | |||| |||| |||||||| | | | || || |||| ||||||||||||||| Sbjct 750 GCGTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGC 691 Query 17577 GTGGACGACCAGTTCGGCGTCGCCTTCGAGGTCTGGACCGGCGGCAAGTCGGACGACGAC 17636 || || | | ||| || ||| | || ||||||||||||||||| | |||||||| Sbjct 690 GTCGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGAT 631 Query 17637 TGCCCGACCCCGACCTCGGACTCGATCTTCTCGGCTC--CGTCGTCCGGCCTCCAGTACG 17694 ||||| ||||| || ||| |||| || ||| | | |||||||| |||| | Sbjct 630 TGCCCCACCCCCAC--CGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATG 573 Query 17695 GCTACTTCCTGATCGCGGGCAAGGAGTTCACGCTCGGCGCGATCAACATCGGCGCGCAGG 17754 | ||| | |||| ||||| |||||||||||||||| || | | ||| | | Sbjct 572 GGTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACATTGAGGTACAGGCGGACG 513 Query 17755 TGTCGACGTTCACCCTGTCCGGAATCTCGATCGCCATCCCGCACTGGGGACGGGGTCCGT 17814 | | | |||||||| || || ||| ||||| |||||| ||||| || || |||| Sbjct 512 TCGCCAACTTCACCCTCTCGGGCATCAGCATCGCTGGCCCGCAGTGGGGTCGTGGCCCGT 453 Query 17815 ACAACGTCGCCGCCACCGACGCGTCCGGCACTCCCGGCCGTCTGCTGGAGCCGATGGACG 17874 || || | ||||| ||| | | ||| | ||||||||| | || ||| | Sbjct 452 GGAATGTTGTCGCCATCGATGACGACAACACGGCTGGCCGTCTGATCACTCCTCCGGATG 393 Query 17875 AGGACTCGCACTTCGCGGTGTTCCGTACGCCGGTCGAGCCGCCCGAGGTCACCAACGGCG 17934 | ||| ||| ||| || || || ||| ||| |||||| || ||| || | Sbjct 392 ATGACCAGCATTTCATTCTGCAGCGCACCCCGATCGCGCCGCCGGA-GTCGACA----CC 338 Query 17935 GTGAGCCTCTGCCGCTGGACATCCTCGGGAAGTTCGTCGCGCCGAACTACTACTTCGGCG 17994 || |||| | |||||||||| ||| | |||| | ||| ||| ||||||||| | Sbjct 337 GTCCGCCTGCG-AGCTGGACATCACCGGCACGTTCCAGGATCCGGACTTCTACTTCGGTG 279 Query 17995 GATCCAGCGG-CGAACCGGCTGCGGACGTGGCACCGGACCAGGACGAGGGC 18044 | || | || | ||||||||| || ||||| ||||| ||| |||| || Sbjct 278 G-GCCGGAGGATGCACCGGCTGCTGATGTGGCGCCGGATCAGCCCGAGTGC 229 >seq539 Length=1209 Score = 138 bits (152), Expect = 5e-28 Identities = 319/478 (67%), Gaps = 13/478 (3%) Strand=Plus/Minus Query 10763 TGTTCTCGGATCCCAAGCTGACCGAGCCGACGCGCTCCA-CCATGGATCCCGAGACCGGC 10821 ||||| |||||| ||| |||| ||||| | | | | |||| || ||||| ||| Sbjct 1077 TGTTCGAGGATCCTGGGCTCACCGCACCGACCC-CGCTATCCATCGACTCCGAG---GGC 1022 Query 10822 CGGATCTACGGGCACATCGCGTGCTTCGGCGCGTGCCACCGGTCGATCCAGGCCCAGTGC 10881 || ||| ||| ||| |||| |||||||| || ||||| | | || | ||||||| Sbjct 1021 CGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAGTGC 962 Query 10882 CTCATGGCTCCGAAATCGCCGACGAACTACTCGCAGTTCCTCACGTCGCCGCCGGTCCTG 10941 | ||| || | || | ||| |||| | || |||| ||| | || ||||| || Sbjct 961 GTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGATG 902 Query 10942 CTCGACAACGGCGAACGACTCCCCGNNNNNNNNNNNNNNNNNNNCACCGGTCACGCTCC- 11000 ||||||||||| || || ||||||| |||||| || || Sbjct 901 CTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGG 842 Query 11001 -CGAGAACCTGTCCGGCGGTCCGGCCGTCGCGCACTACGACAACACCGGCACGTGCTTCG 11059 ||| | || ||| | | | |||| || |||||||||||||||||||| ||||||| Sbjct 841 TCGAAAGCCC--CCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTTCG 784 Query 11060 CGCTCGTCAACGTCGGCGAGGACGAGCACGGGATTTGGTTCTCCGGCGTCGCGGCACCGT 11119 | |||||| || |||||| ||||| ||||| || ||| | || ||||| || ||||| | Sbjct 783 CCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCACC-T 725 Query 11120 GGGCC--ACGCCGGAGCAGATCGAGATGGGCCTCTCCGCGCCCCTGTCGGGCGACTGGCG 11177 || | || || | | | || || ||| | || ||| |||| || || ||||| Sbjct 724 GGCACTGACAGCGAAAC-CCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGATTGGCG 666 Query 11178 GGACTTCGGTCACGGCCTCGACCTGGTGGCGGCGCTCGCCGTGAACACGCCCGGTTTC 11235 | | |||| | | | || || || || || ||||| |||||||| || |||||| Sbjct 665 GCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTC 608 >seq70437 Length=1356 Score = 134 bits (148), Expect = 6e-27 Identities = 190/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 10218 CCGGACGTTCACGAACGCCACGCTCGCGATCCTCGGTACGCCGACCAGCGACGGCCGGAT 10277 |||||||||||| ||||||| |||| | ||||| || | ||| |||||| || || Sbjct 456 CCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCAT 397 Query 10278 GCTCGACAAGGACATCAAGCTCTCGTTCCGCGACTTCCCGCTGCCGGTCATGTGGTGCAA 10337 ||||| ||||||| | || | |||||| |||||| |||||| | |||||| || Sbjct 396 GCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAA 337 Query 10338 GCAGACGACCGGCGGGCACACCGACGCGTACACCGTCGGCGTGCTGGAATCCGCCGAGGT 10397 |||||| | ||| ||| | |||| ||||| |||||||| | ||| |||| || Sbjct 336 GCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGT 277 Query 10398 CAAGGGCAACAAGGTCAAAGGGTCCGGCTACCTGCTCAACACCGCCGAGGCCGACGAGGC 10457 | | ||| || || | |||||| || ||||||||||| | |||||| ||||||| Sbjct 276 CGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGC 217 Query 10458 GGCAGAGCAGCTTGCCCATGGTGTCAC 10484 || || ||| | | || || ||||| Sbjct 216 TGCCGACCAGATCGAGCACGGCGTCAC 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 220313487921520