Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_008204.1 Length=67188 Score E Sequences producing significant alignments: (Bits) Value seq133315 315 3e-81 seq539 89.7 2e-13 seq70437 84.2 9e-12 >seq133315 Length=1321 Score = 315 bits (348), Expect = 3e-81 Identities = 554/793 (70%), Gaps = 32/793 (4%) Strand=Plus/Minus Query 17675 TTCCCCGTGGTGAAGGGCTACACCCTCCGCGCCACCAAGATCAACAACTGCGGTCGCCCG 17734 ||||| || |||| ||| || ||||||||||||||| |||||| ||||| | ||| Sbjct 1014 TTCCCGATGCTGAAAGGCATCAAGCTCCGCGCCACCAAGGTCAACAGTTGCGGGCTCCCC 955 Query 17735 GAATCCGGCGCGGCCAACCGCCTCGTCACCGAAGGCTTCGTCAGCTTCAACCTGTCGCCG 17794 | ||||| | |||| || |||||| || ||||| ||||| |||| || Sbjct 954 GTCGAGGGCGCCGGCAACTATCTGACCACCGACGGTTTCGTGTCGTTCAAAATGTCCCCC 895 Query 17795 GAAATGAAGGCGGCTGAGCAGCTGGAGCAGACCAACGCCGCTGGCA-AGGTGTGCGTCAC 17853 | ||||||| || | || | |||||| ||||| || || | |||||||| |||| Sbjct 894 AACATGAAGGACGCGAACGAGATCGAGCAGGAGAACGC-GCAGGGACAGGTGTGCATCAC 836 Query 17854 CGACCGCACGCCGCCTGAGCGCAAGTGGTGGAACATCGAGGCCACCCTGTGCAACGTCAA 17913 ||||||||| ||||| ||||||||||||| || ||||| |||||||| || || Sbjct 835 CGACCGCACCCCGCCCGAGCGCAAGTGGTACGACCTCGAGCTGGCCCTGTGCGGGGTGAA 776 Query 17914 CACCGAACTCATCACCCTGTTCACCGGGTGGGAGCAGGTTGTCGACTTC---GCCGACCT 17970 | |||| || |||||| || ||| || |||| |||||| ||||||| | | |||| Sbjct 775 CTCCGAGCTGATCACCATGCTCAACGCGTGGAAGCAGGAAGTCGACTACAAGGGCGACTC 716 Query 17971 GCCTGTCGGTATCCGCGACAAGGCTGAGGTCGATGGCGACTACGGCGTGGCGTTGGAGGT 18030 | ||||| |||||||| || ||||| |||||||| ||||| |||| | Sbjct 715 G---GTCGGCTTCCGCGACCAGAAGCGCGTCGAATCGGACTACGGTGTGGCCCTGGAAAT 659 Query 18031 CTGGACCGGCGGCGAAGGCGAGGACGACTGCCCAGTGCCGACCACGGACTCGATCTTCTC 18090 ||||||||||||| | | ||| ||||| ||||| || ||| ||| || ||| | Sbjct 658 CTGGACCGGCGGCAAGGCCGACGACGATTGCCCCACCCCCACCGGCGACGATATTTTCGC 599 Query 18091 GGTGGCCACCTCCGGTAAGCAGTACGGCTACCTGCTGCTGGGCGGCAAGGAGTTCACGCT 18150 | ||| ||||| || |||| || ||||||||| | | |||| ||||||||||| Sbjct 598 CACGAGCACGTCCGGCAAAAAGTATGGGTACCTGCTGACGTGGGGCACCGAGTTCACGCT 539 Query 18151 CGGCAACATCGA--AATCGGCG--CGTCGGTGTCCACGTTCACCATCTCGGGCATC---- 18202 |||| |||| || | |||| ||||| ||| |||||| ||||||||||| Sbjct 538 CGGCGACATTGAGGTACAGGCGGACGTCG----CCAACTTCACCCTCTCGGGCATCAGCA 483 Query 18203 TCGCTGGCCATGCCGCACTGGGGCAAGGGTCCGTACAACGTGGCCGCCATCGACGGCAAC 18262 |||||||| ||||| ||||| || |||| || || | ||||||||| | | || Sbjct 482 TCGCTGGC----CCGCAGTGGGGTCGTGGCCCGTGGAATGTTGTCGCCATCGATGACGAC 427 Query 18263 GGCACGCCCGGCCGCCTGCTGGCACCGACCGGCAAGA--AGGAGCACATCACCTTGTTCC 18320 |||| | ||||| ||| | | || |||| | || | |||| ||| || | Sbjct 426 AACACGGCTGGCCGTCTGATCACTCC-TCCGG-ATGATGACCAGCATTTCATTCTGCAGC 369 Query 18321 GCACGCCGGTGCCGCCCCCGGAGCCG--ACCGGCGGCGCGGTGCCGCTCGACATCACCGG 18378 |||| ||| | |||| |||||| || |||| | || | | | ||| ||||||||||| Sbjct 368 GCACCCCGATCGCGCCGCCGGAGTCGACACCGTCCGC-CTGCG-AGCTGGACATCACCGG 311 Query 18379 CAAGTTCCAGGGCACGACCTACTACTTCGGCGGCCCGGCGGGCGCACCGGCGGCCGACGT 18438 || |||||||| || || ||||||||| || |||| || |||||||| || || || Sbjct 310 CACGTTCCAGGATCCGGACTTCTACTTCGGTGGGCCGGAGGATGCACCGGCTGCTGATGT 251 Query 18439 GGCTCCCGAGCAG 18451 ||| || || ||| Sbjct 250 GGCGCCGGATCAG 238 >seq539 Length=1209 Score = 89.7 bits (98), Expect = 2e-13 Identities = 241/361 (67%), Gaps = 22/361 (6%) Strand=Plus/Minus Query 11538 CACCCCGCAACCACAGCGGCTACCGCGAGTTCCACACCAGCCCGCCGGTGCGCTTGGACG 11597 |||||| | ||| | ||||||| | | ||||||||| ||| |||||| | ||| Sbjct 954 CACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGATGCTCGACA 895 Query 11598 ACGGC-ACCGAGCTGGCCGTCGGCCGCCTGACCGTCGGCATCGGCCACGCCAGCACGGCG 11656 |||| |||| || |||||||| | || ||||| |||| ||| || ||| | || Sbjct 894 ACGGTGACCGT-CTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGGTCG--- 839 Query 11657 GCCAACGTGACCGCCGCGCAAGCAGCTGCG---CACTACGACAACGCTGACGCCTGCTGG 11713 || | || |||| || || || || |||||||||||| | | | |||||| Sbjct 838 ---AAAG---CCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTTC 785 Query 11714 GCGTTGGTCCGGGTAGGCGAGGACGCCTATGGCATCTGGTTCTCCGGTGTGGTGGCCCCG 11773 || | ||||| | ||||| |||| | ||||||||| | || || |||| || || Sbjct 784 GCCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCACCT 725 Query 11774 TGGGCCGACCAGGCCACCGTGGA-GAAGGGCGCGAGCGCGCCGCTGTCCGGCGACTGGCG 11832 | | ||| | ||| || | | |||| || | || || ||||||| || ||||| Sbjct 724 GGCACTGACAGCGAAACCCTGCAGGCCGGGCTCGCG-GCACCCTTGTCCGGGGATTGGCG 666 Query 11833 TGACTTTGGCACAGGGTAC---GAACTCGTGGCGGCGCTGTCGGTGAACACACCGGGATT 11889 | | ||| || || || ||||| || || || |||||||||||||||| || Sbjct 665 GCAGATCGGC---GGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTT 609 Query 11890 C 11890 | Sbjct 608 C 608 >seq70437 Length=1356 Score = 84.2 bits (92), Expect = 9e-12 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 10867 CTTCCGCACGTTCACCGACGCGGTGATCGCGCTGGTCGGTGAACCCACCAGCGACGGGCG 10926 || ||| |||||||||||||| |||| || |||| ||||| ||||||||| Sbjct 459 CTACCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCG 400 Query 10927 CATGCTCAGCCGCG-ACATCGACTTGTCGATGCGCACCTTTCCGCACCCGCTGATGTGGC 10985 ||||||| || || |||||||| | | | |||| ||| || | |||||||||||| Sbjct 399 CATGCTC-GCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGG 341 Query 10986 AGGAGCAGACCGACCACGGACACGGCGGCAGTTACGTCATCGGCGTGGTGGAGGACGCCC 11045 | ||||||||| | |||||||| | | ||| ||||||| | || | ||| | Sbjct 340 TGAAGCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCAC 281 Query 11046 GCCTGGAGGACGGCAAGGTGCTCGGTTCGGGCTACCTGCTCAACA 11090 | | || | || | | |||| || || || |||||||||| Sbjct 280 GTGTCGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACA 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 214341211249524