Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq188037 104 3e-17 seq198254 96.9 4e-15 >seq188037 Length=4270 Score = 104 bits (114), Expect = 3e-17 Identities = 76/87 (87%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| |||||||| |||||||||||||||||||||| |||||| ||||| || Sbjct 1882 AGTCAGGGTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGT--CCTCGAGAGAGG 1939 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| ||||||| Sbjct 1940 GCGTGGGTTCGAACCCCACTCCTGACA 1966 >seq198254 Length=1844 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 6/85 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG---- 126321 |||||| ||||||||||||||||||||||||||||||| |||||| ||||| || Sbjct 83 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGT--CCTCGTAAGAGGT 26 Query 126322 CGTGGGTTCGAACCCCACACCTGAC 126346 |||||||||||||||||| ||||| Sbjct 25 CGTGGGTTCGAACCCCACTTCTGAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555437213207840