Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq112114 174 3e-38 seq86191 102 1e-16 seq20354 93.3 8e-14 seq127046 89.7 9e-13 seq174037 87.8 3e-12 seq155309 87.8 3e-12 seq83862 87.8 3e-12 >seq112114 Length=2115 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| |||| ||| || |||||||| || |||||||| || ||||| Sbjct 1750 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1691 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| |||||||| || || | ||| |||||||| || Sbjct 1690 AAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 1631 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || |||||||| |||||||| ||||| ||| || || ||||| ||| | || || Sbjct 1630 ATCCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCAATCGTGTC-GCTCGGCTCCAC 1572 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || || ||||| |||||||| |||||||| Sbjct 1571 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 1524 Score = 165 bits (182), Expect = 1e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| ||| || ||||||||||| |||||||| || || || Sbjct 1978 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 1919 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| ||||| | || || || || ||| Sbjct 1918 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 1859 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || || || ||||||||| ||||||||||| ||| | || || Sbjct 1858 ATCCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCGATGGTGTC-GCTCGGCTCAAC 1800 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || ||||||||||||||||| |||||||| Sbjct 1799 CTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1752 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || ||||| ||||| ||||||||||| ||||| || ||||| ||| |||||| ||| Sbjct 2101 TGCTGATCGGGAGGAATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATCGTG 2042 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || || |||| ||||| || || || |||||||| |||||||| |||||| Sbjct 2041 TCACTGGGCTCCACCTCCAGTGTGATTGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGC 1982 Query 68460 AT 68461 || Sbjct 1981 AT 1980 >seq86191 Length=3533 Score = 102 bits (112), Expect = 1e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | ||||| || | |||||||| || |||||||| || | || Sbjct 3257 CCACCGCGAAGCCGGAGAACCAACTGCAAGGTGGACTCCTTCTGGATGTTGTAGTGAGAC 3316 Query 68295 AGTGTCCTC-CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || ||| |||||||| | | ||| ||||||||| | || | || |||| ||||| Sbjct 3317 AG-GTCGAGGCCATCTTCGAGTTTCTTGCCGGCGAATCTCAGACGCTGCAGGTCAGGTGG 3375 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||| || ||||||| ||||| ||||| || || ||||| || | ||| | Sbjct 3376 GATGCCCTCTCTGTCTTGGATCTTCGCCTTCACATTTTCAATGGTATCACTGGGTTCGGC 3435 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTT 68446 |||||||||||||| || || || | ||||| Sbjct 3436 CTCCAAGGTGATGGTCTTCCCTGTTAAAGTCTT 3468 >seq20354 Length=4240 Score = 93.3 bits (102), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 9892 TTTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATT---CATGACGCCCGCCT 9948 || ||||||||||||| | | |||||| | || || || ||| || || |||| Sbjct 3299 TTCAGAAGTCTGCGTCCAGCGTAAACACCTGCTCTTCTTTGTTGGCCATCACTCCGGCCT 3240 Query 9949 TCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCT 10008 ||||||||||| |||| ||| |||||||| | ||| || || | ||||||| ||| Sbjct 3239 TCTGGTACTCCCCGACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAGGAAATGTGCT 3180 Query 10009 CCATGAAGTCAAAGGGGTTCTC 10030 |||||||||| || |||||||| Sbjct 3179 CCATGAAGTCGAAAGGGTTCTC 3158 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/136 (76%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 10261 CCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGC 10320 ||||||| || ||||||| ||||||| || || ||||||||||| ||||| || Sbjct 1547 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 1488 Query 10321 GCAGCCAGAAAATGG-CGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACGCACACCC 10377 ||||||||| |||| |||| ||||| || |||| |||||| ||||| ||| | | Sbjct 1487 TCAGCCAGAAGATGGACGCA-AACGATCCCGAGA--AGAAGATGCCCTCGACGGCCGCAA 1431 Query 10378 AGGCGACGAGGCGCTC 10393 | ||||||| |||||| Sbjct 1430 ACGCGACGATGCGCTC 1415 >seq127046 Length=6807 Score = 89.7 bits (98), Expect = 9e-13 Identities = 193/283 (68%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 176741 GAAGTACCGCTTGGCGTCATTGGCGTCGGAGGTACCCAGACCCTTGTAATACTTAGTCTT 176800 ||||||| ||||| || ||||| | ||| |||||||| ||||| ||||| ||| Sbjct 4752 GAAGTACTCTTTGGCCTCCTTGGCCGTGCTGGTGCCCAGACCTTTGTAGTACTTGACCTT 4811 Query 176801 CCAGGTAGAGACA-TCGGATGTCGCGGCCTTCCACTCTTCGAAATCCGGGATGCTGTAGA 176859 |||| | || ||| || || | ||||||||| ||||| || || | |||||||| Sbjct 4812 CCAGCGCT-GCCAGTCGTCCGTGGCCGTCTTCCACTCCTCGAACTCGGGAAGGCTGTAGA 4870 Query 176860 ACTCCACCATCTTGGTGCCCTTCTTGGCGACCACAATTGGAGTCACGAAGCGCTTGAGGA 176919 | | | || ||||||| |||| || || || || | ||| || |||| Sbjct 4871 AGGAGATCTCGTTCTTGCCCTTGCTGGCCTTGACGATGGGCGTGATGAACTCCTCCAGGA 4930 Query 176920 ACCCGGGGATCTCGAGCAGCGACGG-GAACTGTGCATGGAAAAAGTTCAGCACTAGACCA 176978 | ||| | || |||||||||||| || |||| |||| |||||| | | || || Sbjct 4931 A---GGGCAGCTTGAGCAGCGACGGCCAATTGTG-GTGGATAAAGTTGATGAGCAGGCCC 4986 Query 176979 GCAATATGTGAGCCGTCAACGTCCTGGTCTGCCATAATAATCA 177021 || || |||||||| ||||||||||| ||| || |||| Sbjct 4987 TTGATGTGCGAGCCGTCCTGGTCCTGGTCTGTCATGATCATCA 5029 Score = 84.2 bits (92), Expect = 4e-11 Identities = 179/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Plus Query 176267 GTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTT 176326 ||||||||| || || || |||| || || || ||| || || |||| |||||||| Sbjct 4239 GTCCTTGCCCCCTTGCAGCCGGGTCCCAAACTGGCCGATGGGGAGCAGCAGGTTGATGTT 4298 Query 176327 ATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCC 176386 || ||||| |||| ||||| | |||| |||| | | ||| ||| |||||| Sbjct 4299 GTTGCTGCCCACAAAGTCCTGGGCAAGGCCGATGATGGTGGACATGAGGGACATCTCGCC 4358 Query 176387 GTGGTGATAGCCGGCGTTCTC-ACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTT 176445 |||||| || | | || ||| | || | || || | ||| || || ||||| || Sbjct 4359 GTGGTGGTACGCCGAGTGCTCGGCCACTG-AGCCCGCCAGCTGGGCCACCTTGATCTCCC 4417 Query 176446 GTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCAT 176505 | | ||||||||| || || | |||| | ||| |||||| ||||| || || | Sbjct 4418 GCTTGTCGTTGCGCTTGAAGCACGTGTACAGCACCTTGCGCTGCCCCGGCTTGAGCCCGT 4477 Query 176506 CGACGACCGACGGAATGGAACGCTC 176530 | || | ||||| || || ||||| Sbjct 4478 CCACCAGGGACGGGATCGAGCGCTC 4502 >seq174037 Length=1489 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 912 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 971 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 972 CCCCACGTTGGGC 984 >seq155309 Length=1408 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 707 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 648 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 647 CCCCACGTTGGGC 635 >seq83862 Length=2866 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 1900 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 1841 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 1840 CCCCACGTTGGGC 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919266318415520