Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20354 181 2e-40 seq1065 118 2e-21 >seq20354 Length=4240 Score = 181 bits (200), Expect = 2e-40 Identities = 176/224 (79%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||| | ||||||||||||||||| |||| ||| || |||||||| || ||| Sbjct 1325 CTGTTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAAGCAGACTGGGCACTGAAC 1384 Query 42669 TGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||||| | || || ||| || || |||||| | | || || ||| | |||||||| Sbjct 1385 TGGATCG-GCAACCGGAGCGCCACATTTGGCGAGCGCATCGTCGCGTTTGCGGCCGTCGA 1443 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGAT 42787 |||||||||||||||||| | || || |||||||||||||| ||| || || || Sbjct 1444 GGGCATCTTCTTCTCGGGATCGTTTGCGTCCATCTTCTGGCTGAAGAAGCGGGGACTCAT 1503 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 |||||| ||||||||| ||||| |||||||| | ||||||| Sbjct 1504 GCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 1547 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| ||||| Sbjct 377 GAGGCGCGCTGCTTCTACGGCTTCCAGATGGCCATCGAGAATGTGCACTCCGAGATGTAC 436 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCC 42592 | || || |||| |||||| ||| || Sbjct 437 AGCCTCCTCATCGACACTTACATCAAGGACCC 468 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 9/205 (4%) Strand=Plus/Plus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| ||||| | ||||| ||||| ||| ||||| || || || | ||||||| | Sbjct 2059 AGGGCCTGCACACCGACTTCGCCTGTCTCATGTTC---AGTCATCTTGTGAACAAGCCAT 2115 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | | ||||| || || |||||| || || || | || ||| |||||||||| | Sbjct 2116 CTCAAGAGCGTGTGCGACAGATCATCTGCGACGCTGTCGTCATTGAGCAGGAGTTCCTGA 2175 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG---TACA 43005 | | | || || ||| ||||| ||||||||||| ||| || ||| ||| |||| Sbjct 2176 CCGATGCTCTTCCGGTGGCCCTGATCGGCATGAACTGCGAGCTGATG---AAGCGCTACA 2232 Query 43006 TCCAGTACGTCGCCGACCATCTCCT 43030 || ||| |||||||||| ||| || Sbjct 2233 TCGAGTTTGTCGCCGACCGTCTGCT 2257 >seq1065 Length=2691 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 244941 AGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCT 245000 ||||||| | |||||||||||| ||||||||||| |||| | | | || Sbjct 215 AGACCTCTTGCAGGCCGGGGCACTCGTGGGGGCACATGAGGGACCACATCTGGTCCTGCT 156 Query 245001 TGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT 245060 |||| | ||||||| | ||| |||||||||||| | | ||||||||||| | || | Sbjct 155 CCACCCGCCGCATGAACAAGTCCGGGATCCAGAGGCCGTAGAAGAGGTCCCGCGCCCGAT 96 Query 245061 GCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGG 245120 ||| ||| ||| || |||||| |||| |||| |||||||| ||||| | ||||| | Sbjct 95 TCTCCTCCTTGCCTGTATTCTTCTTCAGGTCCAGGAAGTCAAACACGTCCGCATGCCACG 36 Query 245121 GCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||||| ||| | || | || ||||||| || Sbjct 35 GCTCCAGGTACATCGCAAATGCTCCGGGCCTCT 3 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| |||| ||||||| ||| | ||||||||| ||||| ||||||||||||| Sbjct 1092 CCACCTCGTCCGGCGCAGTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGG 1033 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 |||| |||| || || ||||||||| ||||||||| |||||||| |||||| | || Sbjct 1032 TGCCGAGGTTCTTCTGGTTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGG 973 Query 244824 CCCCGGTCTCGAGCTG 244839 || ||||| | ||| Sbjct 972 TGCCCGTCTCTATCTG 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941925044052160