Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq149428 241 6e-59 seq63562 215 2e-51 seq17329 87.8 8e-13 >seq149428 Length=1308 Score = 241 bits (266), Expect = 6e-59 Identities = 667/1004 (66%), Gaps = 34/1004 (3%) Strand=Plus/Minus Query 59910 TCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAAC 59969 || |||||||| | ||| || ||||| ||||| ||||| | ||| || | ||||||||| Sbjct 1300 TCCTCGAACATGATGTACGGGTAGCCGGACTCGAACTGCAGCTCCGCCAGGGTCTGGAAG 1241 Query 59970 AGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCATCTTTTAGCCACGTGTCGTAC 60029 | || || || | ||| | ||| ||| | | || | | | | || ||| Sbjct 1240 AACTCACGCGCCTTGATCTTCGACTTGTGGATGCGCTGGTCGTCCAACATCTCGTAATAC 1181 Query 60030 ATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAGGA 60089 |||||| | | || || | | | | ||||| ||| | || ||| || || Sbjct 1180 TTCTCGGAGATGTTGATGTCCGCGAACGGCACCCCGTAGACCCGCTCGACGTCGTACGGC 1121 Query 60090 GAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGATA 60149 ||||| ||| ||| ||| ||| | || || ||| |||| || || | || Sbjct 1120 GAGAACAGGTACATGTCGTCGTTCTTCCGCGCCAGCTCGAAGGTGATGTCCGGGATGACG 1061 Query 60150 ACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATCC 60209 || || || || || ||||| || |||||||||||||||||||| || |||||||| || Sbjct 1060 ACGCCCAGCGACAGCGTCTTGATCCGGATCTTCTCGTCGGCGTTCTCGCGCTTGGTGTCG 1001 Query 60210 AGG-AACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCCT 60268 ||| |||| | |||||| |||||||| || | || |||||||| || |||||||| | Sbjct 1000 AGGAAACGGTA-GATGTCCGGGTGGTGCGCCTGCAGGTATACCGCACCCGCGCCCTGGCG 942 Query 60269 TGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATGAC 60328 || |||| ||||| | |||||||||| ||| || | | |||||| | |||||||| Sbjct 941 CGCGCCCAACTGGTTGGCGTAGGAGAAGGAATCCTCCAACAACTTCATGATGGGGATGAC 882 Query 60329 TCCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGCTCCTGCCTCGCGGAGGTTG--G 60384 || || | ||| ||||| | | ||| || || || || ||| |||| |||| | Sbjct 881 GCCGGACGACTG--GTTCTCTATCTTCTTGATGGGCGCCCCGTGCTCACGGATGTTGCTG 824 Query 60385 AGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAGA---GAGTCCTGAACGA 60441 || | ||||| |||| ||||| || ||||| |||||||| ||| |||| ||| || Sbjct 823 AGCA-GCAATG-CGACCCCGCCGCCGCGCTTGGACAGCTGCAGAGCGGAGT--TGATGGA 768 Query 60442 TTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGC 60501 || ||||| ||| |||| |||| | | || | |||||| || || ||| || Sbjct 767 -GCGGCCGATCGACTCCATATTGTCTTCGATGCGCAGCAGGAAGCAGGAGACGAGCTCGC 709 Query 60502 ----CTGCGTCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGTTGCAGGCTGGAAGATTCCC 60557 |||| || | || ||||||||||| ||||| || || ||||||||| || Sbjct 708 CGCGCTGCATCTTG----CCGGCGTTGAGGAACGTCGGCGTGGCCGGCTGGAAGCGGCCG 653 Query 60558 TTGATAATGAGATCCACAAGGGACTCAGCGTGCTCGAAGTCTTCGCTGTAGTGG---ATG 60614 ||| || || || || ||| || | || ||| || | | || | Sbjct 652 GCGATGATCTCGTCGACGAGCTGCTCGGCCAACGCGGTGTCGCCGTCGGCGAGGCTCAGC 593 Query 60615 GCCGTGAGTACCACTCGATCTTCGTAGCGCTCGTAATAGCGCTTGCCATCGTTAGTCTTC 60674 ||| | ||| || || ||| ||||||| |||||||||| ||| |||||| Sbjct 592 GCCACCATGCACACACGGTCCTCGAAGCGCTCCAGGAAGCGCTTGCCGTCGAACGTCTTC 533 Query 60675 AAGGCGTAGGAGTTATAGAACTTCAGCGCTCCCATGTAGGTCTTGAAGCGGAACTTGTGT 60734 | | ||| ||| | ||| |||| | ||| || | | | ||| |||||||||||| | Sbjct 532 AGCGTGTACGAGGTGTAGTACTTGAACGCGCCGAGGAACGTCGGGAAGCGGAACTTCTTC 473 Query 60735 CCGTAGGCCTGTTTCATGAGTCTCTTTAGGTCCTCGAAGC-CGTAGCGAAGGACGACATC 60793 || |||| | | | || ||||| | | ||| | || ||| || || ||| || Sbjct 472 GCGAAGGCACGGTCGAACAGGCTCTTGACGAACTC-ACGCGTGTACCGCCCGAGGACCTC 414 Query 60794 CTTGTCCCATAGTTGGACTTCCTCTGTGAGGTGATCCACCTTCTCCTCTAGGGAGTGAAA 60853 | | |||| ||| ||| ||||| || | |||||||| ||| ||| || Sbjct 413 --GGGATCGTAGTACTCCTT-CTCGACGAGGTAGTCGAGCTTCTCCTTGAGGTTGTGGAA 357 Query 60854 GAATACGGTGTTCTTGTTGACGTGCTCCAGGAAGTA--GGCGCG 60895 ||| |||||||||| ||| ||||||| ||||||||| |||||| Sbjct 356 GAAGACGGTGTTCTGGTTCACGTGCTGCAGGAAGTACTGGCGCG 313 >seq63562 Length=1408 Score = 215 bits (238), Expect = 2e-51 Identities = 264/356 (74%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 60114 TCCTTGGCAAGGCGGAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATA 60173 |||||||| || |||| || |||||||| | || ||||| |||||||| ||||| || Sbjct 367 TCCTTGGCCAGTTGGAAGGTCACATCAGGGATGACGACTCCCAGGGAGAGGGTCTTGATG 308 Query 60174 CGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGG 60233 |||||||||||||||||||| || ||||| || || ||||| ||| |||||||||||| Sbjct 307 CGGATCTTCTCGTCGGCGTTCTCGCGCTTAGTGTCGAGGAAGCGAAGAATGTCGGGGTGG 248 Query 60234 TGTGCGTTCAAATATACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAG 60293 || |||| || || ||||| |||||||||||||| || || || ||||| | ||||||| Sbjct 247 TGGGCGTGCAGGTAGACCGCGCCTGCGCCCTGCCTAGCGCCAAGCTGGTTGGCGTAGGAG 188 Query 60294 AAGCTATCTTCTAGAATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGA--C 60351 || || || || ||||||||||| || | || || ||||| || ||||||| | Sbjct 187 AACGAGTCCTCGAGGATCTTCATCACCGGCACCACGCCGGAGGCTTG--GTTCTCGATTC 130 Query 60352 CCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGGAGAATCCAATGC-CGACTCCGCCACCA 60410 || |||||||| | |||| || ||||| || | | | || | || || || || Sbjct 129 GTTTGATCGGAGCAGCGACCTCACGCAGGTTCGA-CAGCAACAGCGCCACGCCCCCGCCG 71 Query 60411 CGCTTAGACAGCTGGAGAGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTC 60466 ||||| ||||| || | | | | ||| | |||||||||||| | | | |||| Sbjct 70 CGCTTGGACAGTTGCAAGGCGGAGTTTACGCTGCGACCGATGGACTCTAAGTTGTC 15 >seq17329 Length=11852 Score = 87.8 bits (96), Expect = 8e-13 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 60129 AACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCG 60188 || || | |||||||| | ||||||| || | | |||||||| || || || || Sbjct 10094 AAAGTAATATCAGGAATAACTACTCCTAAAGACATTGATTTAATACGAATTTTTTCATCT 10153 Query 60189 GCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATAT 60248 || ||||||||||| | ||| | || | || || || || || | || ||||| Sbjct 10154 GCATTTTCACGCTTTGAATCTAAAAATAACATAATATCTGGATGATGAACATTTAAATAA 10213 Query 60249 ACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGA 60308 || ||||| || || || ||| ||| ||||| |||| || || || |||||| ||| Sbjct 10214 ACTGCCCCAGCACCTTGTCTTTGACCTAGTTGATTAGCATATGAAAATGAATCTTCAAGA 10273 Query 60309 ATCTTCATCACAGGGATGACTCC 60331 || ||||| || ||||| || || Sbjct 10274 ATTTTCATAACCGGGATAACCCC 10296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225165364213040