Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq112114 168 2e-36 >seq112114 Length=2115 Score = 168 bits (186), Expect = 2e-36 Identities = 180/235 (77%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || |||| ||| ||||| ||||| || |||| Sbjct 1982 CATG-CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGT 1924 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| ||||| || | ||| || || |||||||| |||||||| ||| | Sbjct 1923 CCGACAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGA---T 1867 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || ||||| || ||||||||||| || || |||||||| || | ||||||| Sbjct 1866 CCGGGGGAATCCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGCTCG 1807 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| || || || ||||||||||| |||||||| Sbjct 1806 GCTCAACCTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1752 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || || || | ||| || || ||||| || |||| Sbjct 1754 CATG-CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 1696 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | ||||| || ||||| | || || || |||||||||||||| || || Sbjct 1695 CGGACAAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGG 1636 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || ||||| || || || ||||||||||| || | ||||||| | Sbjct 1635 GCGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCAATCGTGTCGCTCGGCT 1576 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||| || ||||||||||| || |||||||| |||||||| Sbjct 1575 CCACCTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 1524 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 288340 AAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||||||||||||| ||| || || ||||| || ||||| |||||||| |||||| Sbjct 2113 AAGATCAGACGCTGCTGATCGGGAGGAATACCTTCCTTGTCCTGAATTTTCGCCTTCACG 2054 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| ||||| || || ||| Sbjct 2053 TTCTCGATCGTGTCACTGGGCTCCACCTCCAGTGTGATTGTCTTGCCGGTGAGGGTTTTG 1994 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 1993 ACGAAGATCTGCAT 1980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176563279321848