Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq17329 118 1e-21 >seq17329 Length=11852 Score = 118 bits (130), Expect = 1e-21 Identities = 284/425 (67%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 133033 TATCGGGAACAACTACTCCCAAAGAAAGTGTTTTGATTTGCTTTGCGGATTCTGCATTTT 133092 |||| |||| ||||||||| ||||| | || ||| || | || |||||||||| Sbjct 10101 TATCAGGAATAACTACTCCTAAAGACATTGATTTAATACGAATTTTTTCATCTGCATTTT 10160 Query 133093 CTTTTCTAGTTGA---TAAAAAGTCCATAATATCCGCATGGAAAACATTTAGATAGACTG 133149 | || |||| |||||| ||||||||| | ||| |||||||| ||| |||| Sbjct 10161 CACG-CT--TTGAATCTAAAAATAACATAATATCTGGATGATGAACATTTAAATAAACTG 10217 Query 133150 CGCCTGCACCTTGTCTTTGCCCTAATTGATTTGCGTACCGGAAACCATCTTCTAGCATTT 133209 | || |||||||||||||| |||| |||||| || || || |||||| || |||| Sbjct 10218 CCCCAGCACCTTGTCTTTGACCTAGTTGATTAGCATATGAAAATGAATCTTCAAGAATTT 10277 Query 133210 TCATAACAGGGACGACACCACTACCTGCCCCCTCAATTCCCTTAATAGGGTCACCAAGAG 133269 ||||||| |||| || || | || | ||| ||||| || | |||| Sbjct 10278 TCATAACCGGGATAACCCCTGTTGCTTGATTTTTAATATTTTTAATTGGCGCTCCAAATT 10337 Query 133270 CTCTTAAGTTTGAAAGATTTATGCCGACTCCTCCGCCAAGTTTAGATAGTTGAAGTGCAC 133329 ||||||| |||| | | | | ||||| || ||| |||| |||| || | || | Sbjct 10338 CTCTTAAATTTGTTAAACACAAAGCAACTCCACCACCACGTTTTGATAACTGTAATGAAG 10397 Query 133330 TGTTCAACGTTCTACCAATTGAAGACATTGAATCTTCTACTTGAATTAGAAAACAGCTGA 133389 | | | | || | ||||||| ||| |||||| | | | | ||| |||| ||| Sbjct 10398 TAGTAATAGCTCGAGCAATTGATTCCATGTTATCTTCAATTCGTAAAAGATAACA--TGA 10455 Query 133390 --CATACTCCCCTCTTCTAAGTCTACCTGCATTTAAAAAAGTAGGGGTTGCAGGTTGGTA 133447 || || |||||| | | |||||||||||||| || || || || ||||| | Sbjct 10456 AGTGTATTCACCTCTTTGTTTTTTCCCTGCATTTAAAAATGTGGGAGTAGCTGGTTGAAA 10515 Query 133448 TCTAC 133452 ||||| Sbjct 10516 TCTAC 10520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453340487339520