Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq20354 89.7 6e-13 seq53522 87.8 2e-12 seq1065 86.0 7e-12 >seq20354 Length=4240 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| || |||||| || || |||| || || |||||||| |||||||||| Sbjct 1547 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 1488 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || | ||| || |||||||||||||| ||||| || ||| |||| Sbjct 1487 TCAGCCAGAAGATGGACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACG 1428 Query 126186 CAAAGAGACGCTCAGCAAA 126204 | | || ||||| |||| Sbjct 1427 CGACGATGCGCTCGCCAAA 1409 >seq53522 Length=4295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 256/389 (66%), Gaps = 24/389 (6%) Strand=Plus/Minus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 |||| || | ||||||||| | ||| || || || | || ||||| | |||| Sbjct 1954 ACGGCAATTTGACGATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGA 1895 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCA 10891 ||||| || || || |||| || | ||| ||||| ||||| || ||||| || Sbjct 1894 CGGTTTGTAGCTGCAATGATCACAACTCCC---TCGTTTGCTTCAAATCCGTCCATTTCG 1838 Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACC---ACCC 10945 || | ||| || | |||||| || ||||||||||| ||| | | ||||| ||| Sbjct 1837 ACTAACATTTGGTTTAAGGTTTGCTCACGTTCATCATTGCCGCCGCCCATACCGATACCT 1778 Query 10946 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTT 11005 | ||| ||| || || |||||||||||||| || | ||||| || ||| Sbjct 1777 CTATGGCG------ACCTACCGCATCAATTTCATCGATAAAGATAATACAAGGAGCATT- 1725 Query 11006 TCACGGGCAAC---TTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATT 11062 ||| | | |||||| || | || || | | ||||||||||| ||||||||| Sbjct 1724 --ACGTTTACCCTGTTCAAACATGTTACGCACACGGCTTGCACCGACACCTACAAACATT 1667 Query 11063 TCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCT 11122 || ||||||| | | |||| | | || || || || | ||||| || || ||| Sbjct 1666 TCAACAAAATCAGAGCCGGATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCT 1607 Query 11123 CGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || || || ||||| || || ||||| Sbjct 1606 TTAGCAAGAAGTGTCTTACCGGTTCCAGG 1578 >seq1065 Length=2691 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 114510 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 114569 |||||||||| | | || || |||| || | ||| |||||||| | |||||| | Sbjct 1077 CAGTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCT 1018 Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629 | || ||||| |||| || ||||||||||| |||||||| || || |||||||| | | Sbjct 1017 GGTTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCCCGTCTCTATCT 958 Query 114630 GGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGG-CTCGCCC 114687 | |||| || || || | ||| | | | ||| || |||| ||||| || ||| Sbjct 957 GCGACTCCAGGATGGCGTACCACAGCTGCTGCGCCT-GCAC-CTGGCGCCGGTAGCGCTT 900 Query 114688 CTCCTCCTCGTAC 114700 |||| |||||||| Sbjct 899 CTCCCCCTCGTAC 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595826495389280