Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_011044.1 Length=69904 Score E Sequences producing significant alignments: (Bits) Value seq70437 167 1e-36 seq133315 129 3e-25 seq539 122 4e-23 >seq70437 Length=1356 Score = 167 bits (184), Expect = 1e-36 Identities = 469/706 (66%), Gaps = 32/706 (5%) Strand=Plus/Minus Query 8191 CTGGAGAAGGTGTGGATCGCCACTATCGACGGCAAGACGCGGCATACGCACTTTGCCGCC 8250 ||| |||| ||||||| ||| ||||||| ||||| || | |||| || ||| Sbjct 896 CTGCAGAAAACGTGGATCTGCACGCTCGACGGGAAGACTCGCGCCGCCCACTACGCGGCC 837 Query 8251 GACGGTCAGCGCGCACCCCTCGCCGGTAAGTTCACGGTCGGTGCCGCGCTGCTGGACTTC 8310 ||||| ||||| | | | ||| ||| |||||| || || | | | |||| | Sbjct 836 GACGGGCAGCGGGTAGCGGTCGACGGCAAGTTCGATGTGGGCGGCTACGAGATGGAAGGC 777 Query 8311 CCAGCGGACCCCGCTGGCCCGGCGGCAGAGGT---GAAGAACTGCCGCTGCCGGGTCGGC 8367 || | || || | |||| || | ||| | || |||||||||||| ||| | Sbjct 776 CCGGGAGATCC-GAACGCCCCGC--CTGAGCTTTCGATCAACTGCCGCTGCGCGGTGGCT 720 Query 8368 ATCCTGGCACCGGACGAGGAGCTGCCAGATGAGGTCGACCGGCACACCGAGCGCCTTAAC 8427 | || |||||||| || || |||| ||| | |||||||||||||| ||| | Sbjct 719 GTTCTCGCACCGGATGAACCTCTCCCAGCAGAGATGGACCGGCACACCGAACGCGGCCCC 660 Query 8428 GGGCGCGACAGCGTGCAAGTCAACCGGCAGGGTAGCCAGTCCGACGAGATTGCCCGCCGG 8487 || | || ||| |||| |||||| || | || ||||||||||| ||| | ||| Sbjct 659 GGCGACTCCACCGT-CAAG--AACCGGTCCGGCACACAATCCGACGAGATCGCCAGACGG 603 Query 8488 GCCAAGCAGGGCACGATCCGCGCCCGCGACGACGAGGACGGCGTAGGTCGAACGGCCAGC 8547 ||| | | |||| ||||| |||||||||||| ||||| | || | ||| Sbjct 602 GCCGACGACGGCAACATCCGAGCCCGCGACGACCCCGACGGTATCGGGC--ACGTA---- 549 Query 8548 GCCGCACCGAGCGAACAGGAGTACGACATGCCGCAGCCGACCCCGGCCGACACCGCCGCA 8607 |||||| | | |||| |||| | |||| |||||| | | |||| | || Sbjct 548 GCCGCATCTATCGAA--GGAGCAAC-CATG-----GCCGACGAC--CAGACA--GACGAT 501 Query 8608 GCACTGGCCGCAGAAGCCGACGACGATGC--CGCCGAG--ACGTTCCGCGTGTTCACCGA 8663 |||| | || | | || || |||| || || | || | ||| ||||||||| Sbjct 500 GCACCGAACGACGCGCCGGAAGATAATGCTCCGGCGGGTGAC-TACCGGACGTTCACCGA 442 Query 8664 CCAGCCCATCGCGTTCGTCGGCATCGAGACCAGCGATGGTCGGATGCTGGCCACCGACAT 8723 | || |||| | |||||| | ||| ||| || || ||||| || | ||||| Sbjct 441 CGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCATGCTCGCATCGGACAT 382 Query 8724 CGAGTTCAGCGTGCGCACCCCGCCGCTGCCGATGATGTGGACCAAGCAGACCGGGTATGG 8783 ||| ||| | | |||| | || |||||| |||||||| ||||||||||| | || Sbjct 381 CGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAAGCAGACCGGCTTCGG 322 Query 8784 CCATGAGGACGCCTTCACGGTGGGCGTCATCGAGAGCGCCCGCGTGGACGGCGACACCAT 8843 || || |||||| |||||| ||||||||||| ||| || || ||||||||| |||| Sbjct 321 ACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGTCGACGGCGACGCCAT 262 Query 8844 CCGTGGGTCCGGCTACTGGCTGAACACCACCGAGGCCGACGAGGCT 8889 || | |||||| || ||| ||||| |||||| |||||||| Sbjct 261 CCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGCT 216 >seq133315 Length=1321 Score = 129 bits (142), Expect = 3e-25 Identities = 175/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 15443 GCAGGACAACGCCGAGGGCAAGGAGTGCTTTACCGACCGCACGCCGCCCGAGCGCCGGTG 15502 |||||| ||||| |||| ||| |||| | ||||||||||| |||||||||||| ||| Sbjct 868 GCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTG 809 Query 15503 GTACACCCCGGCCCTGGAGCTGTGCAACGTGAACACCGGTCTGCTGACCATGTTCACCGG 15562 |||| || | |||| |||||| |||||| ||| ||| | |||||| ||| || Sbjct 808 GTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGC 749 Query 15563 CTGGGAGTCGGTGCTTGACGCCAACGACCTGCCCGTTGGCTACCGCGACCAGAAGGAAAT 15622 ||| || || | ||| ||| | | | || |||| ||||||||||||| | Sbjct 748 GTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGT 689 Query 15623 CGAGACCGACTTCGGCATTGCGCTGGAGCTGTGGACCAGCGGCAAGTCCGACGAGGACTG 15682 ||| | |||| ||| | || ||||| | |||||| |||||||| ||||||| || || Sbjct 688 CGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTG 629 Query 15683 CGCC 15686 | || Sbjct 628 CCCC 625 >seq539 Length=1209 Score = 122 bits (134), Expect = 4e-23 Identities = 287/426 (67%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 9241 GGGCGCATTTTCGGTCACCTGGCGTGCTTCGGTGCCTGCCATCGCAGTATCCAGGCTGAG 9300 || ||||| ||| ||||| || |||||||| || |||||| | || | || Sbjct 1024 GGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAG 965 Query 9301 TGCGTGGTGGCCCCGCGCAGCCGCACCGGGTACAGCATGTTCCACACCAGCCCGGCCGTA 9360 ||||| ||| || | | || ||||| ||| | ||||||||| ||| | || Sbjct 964 TGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTG 905 Query 9361 CGTCTGGACGACGGCACCAGCCTGCCGGTGGGACGGCTCACTGTGGGCAGCGGCCACGC- 9419 || ||| |||| | | || || || || ||||||| ||||||| ||| || || Sbjct 904 ATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCC 845 Query 9420 -GCCCGACCACGTGAGCGGCCAGGTGGCGGCGGCGCACTACGACACCGCCGGTACCTGCT 9478 | ||| | | || ||| | || || || |||||||||| | |||| ||||||| Sbjct 844 GGGTCGA--AAGCCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCT 787 Query 9479 TCGCGCTGGTGCGCGTGGGTGAGGACAAGCACGGCATCTGGTTCTCCGGCGTGGCCGCAC 9538 |||| || || |||| || || ||| | |||||||||||| | || |||||||||||| Sbjct 786 TCGCCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCA- 728 Query 9539 CCTGGGCCACCGCCGAGCAGATCGAAATGGGCCTGTC-CGCG---CCGCTGTCCGGCGAC 9594 ||||| ||| | | ||| | | |||| | | |||| || ||||||| || Sbjct 727 CCTGG--CACTGAC-AGCGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGAT 671 Query 9595 TGGCGCGACTTCGGCCAGGGCCTGGAGCTGGTGGCGGCGCTGGCGGTGAACACGCCCGGC 9654 ||||| | ||||| | ||||||| || || || || ||||||||||| || || Sbjct 670 TGGCGGCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGT 611 Query 9655 TTCGCG 9660 ||| || Sbjct 610 TTCCCG 605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 223010748096740