Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq71940 755 0.0 seq117463 414 1e-110 seq101368 255 6e-63 seq27177 89.7 5e-13 >seq71940 Length=2400 Score = 755 bits (836), Expect = 0.0 Identities = 738/943 (78%), Gaps = 6/943 (1%) Strand=Plus/Plus Query 155934 CGCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGAC 155993 ||||||||||||||||||||| |||| || || | ||||| ||| | || ||||| Sbjct 406 CGCCATCAACTGGAACCGCGTCGTCGATCCGATCGATGATGAGGTCTGGGATCGCCTGAC 465 Query 155994 CAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCA 156053 | |||||||||||||||||||||| | ||| || ||||||| ||||||||||| Sbjct 466 CGGCAACTTCTGGCTGCCGGAGAAGGTTCCGCTGAGCAATGACATCCAGTCGTGGGCGAC 525 Query 156054 GCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGA 156113 |||||||| || ||| | || ||||| || |||||||| ||||| |||| || Sbjct 526 TCTGACCGACGATGAGAAGACACTGACGATGCGCGTCTTCACCGGTCTGACCCTGCTCGA 585 Query 156114 CACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGA 156173 ||| ||||||||||||||||| ||| |||||||||||||||| || | ||||||||||| Sbjct 586 CACGATCCAGGGCACCGTCGGTGCGATCTCGCTCATCCCGGATGCGGTGACCCCGCACGA 645 Query 156174 GGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGC-ACGCAGCTACTCGA 156232 ||||| ||| || ||||||||||||||||||||||||||||| | | | ||||| Sbjct 646 AGAGGCAGTGCTGACGAACATCGCGTTCATGGAGAGCGTGCACGCGAAGTCG-TACTCCT 704 Query 156233 ACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGG 156292 ||||||||||| |||||||| || ||||||||||||| || |||||||||||| | Sbjct 705 CGATCTTCTCGACCCTGTGCTCGACGAAGGAGATCGACGAGGCATTCCGCTGGTCGCGTG 764 Query 156293 AGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGACGACC 156352 ||||| || |||||||| ||||| || ||| | |||||||||||| || ||||| | Sbjct 765 AGAACACCTACCTGCAGTCCAAGGCCGATATCATCCTCAGCTACTACCGGGGCGACGATC 824 Query 156353 CGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCT 156412 ||||||||||||||||||| || |||||||| ||| ||||| |||||| |||||||| Sbjct 825 CGCTCAAGCGCAAGGTCGCTTCGACGCTGCTCGAGTCGTTCCTCTTCTACTCCGGCTTCT 884 Query 156413 ACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATCCGGC 156472 ||||||| |||| ||||||| ||| | ||| || || |||||||| ||| | ||||| | Sbjct 885 ACCTGCCCATGTACTGGTCGGCGCACGCCAAACTGACGAACACCGCTGACCTCATCCGTC 944 Query 156473 TCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCC 156532 | |||||||| |||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 945 TGATCATCCGCGACGAGGCTGTGCACGGCTACTACATCGGCTACAAGTATCAGAAGGGCC 1004 Query 156533 TGGAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATG-AGCTGCTG 156591 ||||| | || || ||| ||| ||||||| ||||||||||||| | ||| | || || Sbjct 1005 TGGAGTCGCAGTCCGAGGAGCGCAAGCAGGAGCTCAAGGACTACA-CGATGAACCTCCTC 1063 Query 156592 TTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGCCAG 156651 |||||||| | ||| |||||| | |||||||| ||| ||||||| | || | | Sbjct 1064 TTCGAGCTCTACGAGAACGAGGTCGCCTACACCCACGACATCTACGATCCGGTGGGGCTG 1123 Query 156652 ACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGGGC 156711 |||||||| |||| |||||| | ||||||| ||||||||| ||| |||||| ||| Sbjct 1124 TCCGAGGACTGCAAGATGTTCCTCCACTACAACGCCAACAAGGCGCTGATGAACCTCGGC 1183 Query 156712 TACGACGCGCTGTTCAGC-CGCAGCGACTGCGACGTCAACCCGGCCATCCTGAGCGCGCT 156770 ||||| ||| ||||| | | || | | | || || ||||||||||| || || Sbjct 1184 TACGAAGCGATGTTCCCCAAGGAG-GTCACGAAGGTGAATCCGGCCATCCTTGCGGCTCT 1242 Query 156771 GTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACGTCAT 156830 ||| ||||| | || |||||||||||||||||||| || ||||| | |||||||| Sbjct 1243 GTCACCCGGCAGCGATGAGAACCACGACTTCTTCTCCGGTTCGGGATCGTCCTACGTCAT 1302 Query 156831 GGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGA 156873 | ||||| | | ||| |||||||||||||||||||||||| Sbjct 1303 CGGCAAGGCAGAGAACACAGAAGACGACGACTGGGACTTCTGA 1345 >seq117463 Length=1413 Score = 414 bits (458), Expect = 1e-110 Identities = 665/945 (70%), Gaps = 18/945 (2%) Strand=Plus/Plus Query 155938 ATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACCAAC 155997 ||||| ||||||||||| ||||||||| ||| ||||| ||||||||||| ||| Sbjct 343 ATCAATTGGAACCGCGTCGGCGACGAGAAAGACCTCGAGGTATGGAACCGGCTCACCGCG 402 Query 155998 AACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCAGCTG 156057 ||||||||||| || |||||| | || ||||||| ||| ||| | ||||| ||| Sbjct 403 AACTTCTGGCTACCCGAGAAGGTGCCACTGTCCAACGACATCCCCGCCTGGCAGAGGCTC 462 Query 156058 ACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGACACC 156117 |||||| | || || |||| ||||| || |||||||| ||||||||||| ||||| Sbjct 463 ACCGAGAAGGAACGAACTCTCACTATGCGTGTCTTCACCGGGCTGACGATGCTTGACACG 522 Query 156118 ATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGAGGAG 156177 | || | ||| ||||| | | ||| | |||| ||| || |||| ||||| ||| Sbjct 523 GTGCAAGCCACAGTCGGGGAGATCTGTCAGATCCAGGATGCTCGCACCGAACACGAAGAG 582 Query 156178 GCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTACTCGAACATC 156237 || || ||||||||||||||||||||| || |||||||| || |||||| | Sbjct 583 GCCGTCTACACCAACATCGCGTTCATGCAGTCGGTGCACGCCCGGTCCTACTCTTCGGTG 642 Query 156238 TTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGGAGAAC 156297 ||||| || ||| ||| ||||||||||| ||| | || ||| | | | ||| Sbjct 643 TTCTCCACCCTGACGAGCACTCCGGAGATCGACGACGCCTACCAGTGGGCCGTAAACAAC 702 Query 156298 GCCAACCTGCAGAAGAAG-GCTG--AGATCGTGCTCAGCTACTACAACGGTGACGACCCG 156354 | |||||| || || | || | | || || | ||||| |||| |||||||| Sbjct 703 G---ACCTGCTTCAGCAGCGGTGCAAAAAGGTACTGAAACACTACTACGGCAACGACCCG 759 Query 156355 CTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCTAC 156414 ||||| || |||||| |||| || |||||| | ||| ||||| || |||||| Sbjct 760 CTCAAACGGAAGGTCTCCTCTACTCTGCTGTCCTCGCTGCTGCTCTACGCAGGGTTCTAC 819 Query 156415 CTGCCGATG---TTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATCCGG 156471 ||||| || |||| ||| || | || || ||||||||||| ||||||||||| Sbjct 820 CTGCCATTGCATTTCT--CCGT-GCACGCCACACTGACCAACACCGCAGACATGATCCGC 876 Query 156472 CTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGC 156531 |||||| | ||||| |||||||||||||||||||| ||||||||| | ||| ||| Sbjct 877 CTCATCCTGCGGGATAAGGCCGTGCACGGCTACTACTCCGGCTACAAATATCAGCGAGGC 936 Query 156532 CTGGAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTGCTG 156591 | ||||| || | | || ||| | || | | || | |||||| |||||||| Sbjct 937 ATCGAGAATCAGGCATCTGAACGGCAGAACGAGATGCACGAGTTCACCTACGAGCTGCTT 996 Query 156592 TTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCAC-CGGCCA 156650 || || | ||| |||| | ||| | || || ||||| ||| | || | Sbjct 997 GAAGACCTCTACGAGCTAGAGCTCGCCTACTCAGGTGAACTGTACGA-GCCGCTGGGGCT 1055 Query 156651 GACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGGG 156710 || || |||||| |||| | || ||||||| |||||||| ||| |||||| || Sbjct 1056 GATGGACGACGTGGCAGTGTTCGTACGCTACAACGCGAACAAGGCACTGATGAACCTCGG 1115 Query 156711 CTACGACGCGCTGTTCAGCC--GCAGCGACTGCGACGTCAACCCGGCCATCCTGAGCGCG 156768 |||| || | ||||||| | || ||| ||| ||||| |||| ||||| ||| Sbjct 1116 CTACCCTGCACGTTTCAGCCCGGGAGAGAC--CGAAGTCAATCCGGAAATCCTCGCCGCA 1173 Query 156769 CTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACGTC 156828 ||| | || |||| || |||||||||||||||||||| ||||| || | | |||||| Sbjct 1174 CTGGCACCAGGTGCTGATGAGAACCACGACTTCTTCTCCGGGTCCGGTTCCTCCTACGTC 1233 Query 156829 ATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGA 156873 || | |||||| | | |||| |||| |||||||||||||||| Sbjct 1234 ATCGGCAAGGGCGAAGACACCAGCGACGCCGACTGGGACTTCTGA 1278 >seq101368 Length=1472 Score = 255 bits (282), Expect = 6e-63 Identities = 272/357 (76%), Gaps = 4/357 (1%) Strand=Plus/Plus Query 152965 ACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGAGGGCGAGGGCGTAGCCGCCA 153024 |||||||||||||||| | |||||||| || |||||||||| || ||| | || || | Sbjct 1 ACATCGGCACCGAGCACATTCTGCTCGGCCTCATCCACGAGGGTGAAGGCCTGGCAGCGA 60 Query 153025 AGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCGTGCCGAGGTCGAGGAGATCA 153084 |||| || ||| | |||||| ||| ||| ||||||| | | | ||| | ||||||| Sbjct 61 AGGCTCTCGAGGGTATGGACATCTCCCTCGAGCAGGTGCGCGACCAAGTCCAAGAGATCA 120 Query 153085 TCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTTCACCGACCGCTCCAAGCGCG 153144 |||| || || |||||||| || | |||||||||||||||||| || | ||| | Sbjct 121 TCGGACAGGGACAGCAGGCCCCGAGCGGGCACATCCCGTTCACTCCGCGGGCGAAGAAGG 180 Query 153145 TCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCACAACTACATCGGCACCGAGC 153204 |||| ||||| || || ||||| |||||||| || |||| ||||||||| ||||||| Sbjct 181 TCCTCGAGCTCAGCCTCCGTGAGGCTCTGCAGCTGGGACACAGCTACATCGGAACCGAGC 240 Query 153205 ATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGGCTGCCAGGTGCTGGTGAAGC 153264 | ||||||| | |||||||| |||||||||||||| | | |||||||| || |||| Sbjct 241 ACATCCTGCTCGGTCTGATCCGTGAGGGTGAGGGCGTCGCCGCACAGGTGCTCGTCAAGC 300 Query 153265 GCGGCGCGGAGCT--GACCAAGGTCCGCCAGGTGGTCATCCAGCTGCTGTCCGGGTA 153319 |||||||| || ||| |||||||||| |||||| | |||||||| || || Sbjct 301 TGGGCGCGGACCTCGGAC--GCGTCCGCCAGGAAGTCATCAAACTGCTGTCGGGCTA 355 >seq27177 Length=1090 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| |||||| ||||||||||||| ||||||||||| ||||| || ||||||||| Sbjct 904 GCGGGGTGGAGCAGTTCGGTAGCTCGCCGGGCTCATAACCCGGAGGTCGGAGGTTCAAAT 963 Query 92675 CCCACTCCCGCCAC 92688 || | |||||||| Sbjct 964 CCTCCCCCCGCCAC 977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525252177520320