Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_012027.1 Length=69378 Score E Sequences producing significant alignments: (Bits) Value seq133315 275 3e-69 seq539 197 6e-46 seq70437 131 7e-26 >seq133315 Length=1321 Score = 275 bits (304), Expect = 3e-69 Identities = 530/772 (69%), Gaps = 20/772 (3%) Strand=Plus/Minus Query 17131 CGTGCCACCAAGGTCAACTCTTGCGGGCTGCCGATCAGCGGTCCCGCCAACCGGATCGTG 17190 || ||||||||||||||| ||||||||| || || || ||| |||| ||| || Sbjct 987 CGCGCCACCAAGGTCAACAGTTGCGGGCTCCCCGTCGAGGGCGCCGGCAACT--ATC-TG 931 Query 17191 ACC---GACGGCTTCGTCACCTTCAACATCGACCCGGTGCTCAAGGACGCGGAGGAGCTG 17247 ||| ||||| ||||| | ||||| || ||| | ||||||||| | ||| | Sbjct 930 ACCACCGACGGTTTCGTGTCGTTCAAAATGTCCCCCAACATGAAGGACGCGAACGAGATC 871 Query 17248 TCGCAGACCAACGCGGCCGGTAAGGAATGCGTCACCGACCGCACTCCGCCGGAGCGGAAG 17307 |||| |||||| || ||| ||| ||||||||||||| ||||| ||||| ||| Sbjct 870 GAGCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAG 811 Query 17308 TGGTACAACATCCAGGCCGAACTCTGCGGTGTCAACACCGGCCTGATCACCCTGCTCAAC 17367 |||||| || || || | || ||||| || ||| ||| ||||||||| |||||||| Sbjct 810 TGGTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAAC 751 Query 17368 GGGTGGCCGCAGATCCTCGACTACGACGACAACCCGATCGGTTTCCGCGACCAGAAGGAA 17427 | |||| |||| |||||||| | | | || || |||| ||||||||||||||| Sbjct 750 GCGTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGC 691 Query 17428 GTGGACGACCAGTTCGGCGTCGCCTTCGAGGTCTGGACCGGCGGCAAGTCGGACGACGAC 17487 || || | | ||| || ||| | || ||||||||||||||||| | |||||||| Sbjct 690 GTCGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGAT 631 Query 17488 TGCCCGACCCCGACCTCGGACTCGATCTTCTCGGCTCCGG--CGTCCGGTCTCCAGTACG 17545 ||||| ||||| || ||| |||| || ||| | | | ||||||| |||| | Sbjct 630 TGCCCCACCCCCAC--CGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATG 573 Query 17546 GCTACTTCCTGATCGCGGGTAAGGAGTTCACGCTCGGCGCGATCAATATCGGCGCGCAGG 17605 | ||| | |||| ||| | |||||||||||||||| || | | ||| | | Sbjct 572 GGTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACATTGAGGTACAGGCGGACG 513 Query 17606 TGTCGACGTTCACGCTGTCCGGCATCTCGATCGCCATCCCGCACTGGGGTCGGGGTCCGT 17665 | | | ||||| || || |||||| ||||| |||||| |||||||| || |||| Sbjct 512 TCGCCAACTTCACCCTCTCGGGCATCAGCATCGCTGGCCCGCAGTGGGGTCGTGGCCCGT 453 Query 17666 ACAACGTCGCCTCCATCGACGCGTCCGGCACCCCCGGACGTCTGCTGGAGCCGATGGACG 17725 || || | | ||||||| | | ||| | || |||||| | || ||| | Sbjct 452 GGAATGTTGTCGCCATCGATGACGACAACACGGCTGGCCGTCTGATCACTCCTCCGGATG 393 Query 17726 AGGACTCGCACTTCGCGGTGTTCCGTACGCCGGTCGCGCCGCCCGAGGTCACCAACGGCG 17785 | ||| ||| ||| || || || ||| |||||||||| || ||| || || | Sbjct 392 ATGACCAGCATTTCATTCTGCAGCGCACCCCGATCGCGCCGCCGGA-GTCGACACCGTCC 334 Query 17786 GCGAGCCTCTGC-CGCTGGACATCCTCGGGAAGTTCGTCGCGCCGAACTACTACTTCGGC 17844 || |||| |||||||||| ||| | |||| | ||| ||| ||||||||| Sbjct 333 GC------CTGCGAGCTGGACATCACCGGCACGTTCCAGGATCCGGACTTCTACTTCGGT 280 Query 17845 GGATCCGGCGG-CGAACCGGCTGCGGACGTGGCACCGGACCAGGACGAGGGC 17895 || |||| || | ||||||||| || ||||| ||||| ||| |||| || Sbjct 279 GG-GCCGGAGGATGCACCGGCTGCTGATGTGGCGCCGGATCAGCCCGAGTGC 229 >seq539 Length=1209 Score = 197 bits (218), Expect = 6e-46 Identities = 336/478 (70%), Gaps = 13/478 (3%) Strand=Plus/Minus Query 10634 TGTTCTCGGATCCCAAGCTGACCGAGCCGACGCGCTCCA-CCATGGATCCCGAGACCGGA 10692 ||||| |||||| ||| |||| ||||| | | | | |||| || ||||| || Sbjct 1077 TGTTCGAGGATCCTGGGCTCACCGCACCGACCC-CGCTATCCATCGACTCCGAG---GGC 1022 Query 10693 CGGATCTACGGGCACATCGCGTGCTTCGGCGCGTGCCACCGGTCGATCCAGGCCCAGTGC 10752 || ||| ||| ||| |||| |||||||| || ||||| | | || | ||||||| Sbjct 1021 CGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAGTGC 962 Query 10753 CTCATGGCTCCGAAGTCGCCGACGAACTACTCGCAGTTCCTCACGTCGCCGCCGGTCCTG 10812 | ||| || | || | ||| |||| | || |||| ||| | || ||||| || Sbjct 961 GTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGATG 902 Query 10813 CTCGACAACGGCGAGCGACTCCCCGTCGGACGCCTCACCGTCGGCACCGGTCACGCTCC- 10871 ||||||||||| || || ||||||||||| | |||||||| |||||||| || || Sbjct 901 CTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGG 842 Query 10872 -CGAGAACCTGTCCGGCGGTCCGGCCGTCGCGCACTACGACAACACCGGCACGTGCTTCG 10930 ||| | || ||| | | | |||| || |||||||||||||||||||| ||||||| Sbjct 841 TCGAAAGCCC--CCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTTCG 784 Query 10931 CGCTCGTCAACGTCGGCGAGGACGAACACGGGATCTGGTTCTCCGGCGTCGCGGCACCGT 10990 | |||||| || |||||| ||||||||||| |||||| | || ||||| || ||||| | Sbjct 783 CCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCACC-T 725 Query 10991 GGGCC--ACGCCGGAGCAGATCGAGATGGGCCTCTCCGCACCCCTGTCGGGCGACTGGCG 11048 || | || || | | | || || ||| | |||||| |||| || || ||||| Sbjct 724 GGCACTGACAGCGAAAC-CCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGATTGGCG 666 Query 11049 GGACTTCGGTCACGGCCTCGACCTGGTGGCGGCGCTCGCCGTGAACACGCCCGGTTTC 11106 | | |||| | | | || || || || || ||||| |||||||| || |||||| Sbjct 665 GCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTC 608 >seq70437 Length=1356 Score = 131 bits (144), Expect = 7e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 10089 CCGGACGTTCACGAACGCCACGCTCGCGATCCTCGGTACGCCGACCAGCGACGGCCGGAT 10148 |||||||||||| ||||||| |||| | ||||| || | ||| |||||| || || Sbjct 456 CCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCAT 397 Query 10149 GCTCGACAAGGACATCAAGCTCTCGTTCCGCGACTTCCCTCTGCCGGTCATGTGGTGCAA 10208 ||||| ||||||| | || | |||||| |||||| |||||| | |||||| || Sbjct 396 GCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAA 337 Query 10209 GCAGACGACCGGCGGGCACACCGATGCGTACACCGTCGGCGTGCTGGAATCCGCCGAGGT 10268 |||||| | ||| ||| | | || ||||| |||||||| | ||| |||| || Sbjct 336 GCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGT 277 Query 10269 CAAGGGCAACAAGGTCAAGGGGTCCGGCTACCTGCTCAACACCGCCGAGGCCGACGAGGC 10328 | | ||| || || | |||||| || ||||||||||| | |||||| ||||||| Sbjct 276 CGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGC 217 Query 10329 GGCAGAGCAGCTTGCCCATGGTGTCAC 10355 || || ||| | | || || ||||| Sbjct 216 TGCCGACCAGATCGAGCACGGCGTCAC 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221331743537964