Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq20354 84.2 3e-11 seq1065 82.4 9e-11 >seq20354 Length=4240 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| || |||||| || || |||| || || |||||||| |||||||||| Sbjct 1547 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 1488 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || | ||| || || ||||||||||| ||||| || ||| |||| Sbjct 1487 TCAGCCAGAAGATGGACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACG 1428 Query 127659 CAAATAGACGCTCGGCAAA 127677 | | | |||||| |||| Sbjct 1427 CGACGATGCGCTCGCCAAA 1409 >seq1065 Length=2691 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 116471 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 116530 |||||||||| | | || || |||| || | ||| |||||||| | |||||| | Sbjct 1077 CAGTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCT 1018 Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 | || ||||| |||| || ||||||||||| ||||| || || || |||||||| | | Sbjct 1017 GGTTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCCCGTCTCTATCT 958 Query 116591 GGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG-CTCGCCC 116648 | |||| || || || | ||| | | | ||| || |||| ||||| || ||| Sbjct 957 GCGACTCCAGGATGGCGTACCACAGCTGCTGCGCCT-GCAC-CTGGCGCCGGTAGCGCTT 900 Query 116649 CTCCTCCTCGTAC 116661 |||| |||||||| Sbjct 899 CTCCCCCTCGTAC 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611938799518560