Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq20354 104 4e-17 seq1065 87.8 3e-12 >seq20354 Length=4240 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| ||| ||||| ||||||| | | ||||||| ||||||| || ||| | Sbjct 1547 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 1488 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | ||||| || |||| |||||| | || || ||||| ||||| ||||||||||||| Sbjct 1487 TCAGCCAGAAGATGGACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACG 1428 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 | |||| | ||| ||||| | |||| | || | |||| | ||||| || | Sbjct 1427 CGACGATGCGCTCGCCAAATGTGGCGCTCCGGTTGCCGATCCAGTTCAGTGCCCAGTCTG 1368 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCC 160174 | ||| | ||||| ||||| ||| |||||||| |||| | |||| Sbjct 1367 CTTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAACAGACGGTCC 1318 >seq1065 Length=2691 Score = 87.8 bits (96), Expect = 3e-12 Identities = 168/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 205067 TTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTG 205126 || ||||| ||| | |||| || ||||| || || ||| || || || | | | Sbjct 246 TTGGTGTAGAGCCTCTCAAATTCCTCTCCGTAGACCTCTTGCAGGCCGGGGCACTCGTGG 187 Query 205127 GGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATC 205186 || ||||| || ||||||||||| || | | ||||| | ||| |||| ||| |||| Sbjct 186 GGGCACATGAGGGACCACATCTGGTCCTGCTCCACCCGCCGCATGAACAAGTCCGGGATC 127 Query 205187 CACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAG 205246 || |||||||| || || || || |||| | | | || | || ||||| |||| | Sbjct 126 CAGAGGCCGTAGAAGAGGTCCCGCGCCCGATTCTCCTCCTTGCCTGTATTCTTCTTCAGG 67 Query 205247 TCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGG 205305 ||||| ||| | | | ||| || ||||||||||| | ||| || | ||| || || Sbjct 66 TCCAGG-AAGTCAAACACGTCCGCATGCCACGGCTCCAGGTACATCGCAAATGCTCCGGG 8 Query 205306 CCTCT 205310 ||||| Sbjct 7 CCTCT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793122425488960