Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq20354 149 6e-31 seq112114 131 2e-25 >seq20354 Length=4240 Score = 149 bits (164), Expect = 6e-31 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 ||||| ||||||||||| || | |||||||||||| || || || || ||||| || ||| Sbjct 1533 ATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATG 1474 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 | || || ||||| ||||||| ||||||||||||||| || || || | ||||||| Sbjct 1473 GACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACGCGACGATGCGCTCG 1414 Query 133051 CCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCT-TTGAC 133109 || || ||||| | || |||||||| ||| ||||| || | |||| || || | Sbjct 1413 CCAAATGTGGCGCTCCGGTTGCCGATCCAGTTCAGTGCCCAGTCTG-CTTTCCTCTTAAT 1355 Query 133110 GCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143 ||| |||||||| || | |||||| |||| |||| Sbjct 1354 GCAGGGCATCGTCTCAACGGCGTTGAACAGACGG 1321 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||||||| ||||| || ||||| || ||||| ||||| || || || Sbjct 457 GTAAGTGTCGATGAGGAGGCTGTACATCTCGGAGTGCACATTCTCGATGGCCATCTGGAA 398 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||||| ||||| |||||||| |||||| || || ||| ||||||||| ||| Sbjct 397 GCCGTAGAAGCAGCGCGCCTCCGTCACCTGGACCTCCTGACTGAAACGCTCCACC 343 >seq112114 Length=2115 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| |||| || ||| | | | Sbjct 1752 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAGC 1811 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | ||||||| ||||| || || |||||| | || || Sbjct 1812 GACACCATCGAAAACG-TCAAGGCCAAAATCCAGGACAAGGAAGGGATTCCCCCGGATCA 1870 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| || || || |||| |||||||| |||||||| Sbjct 1871 GCAGCGTCTCATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTGTCGGACTACAA 1930 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || || |||| |||||| || | || ||| Sbjct 1931 CATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGGC 1979 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || ||||||||||| |||| || ||| | | | Sbjct 1524 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGAGCCGAGC 1583 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | || | || || | ||||| ||||| || || ||||||| Sbjct 1584 GACACGATTGAAAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGGATCCCGCCCGACCA 1642 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | ||| ||||| ||||| || || | |||||| | ||||||||| Sbjct 1643 GCAACGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGACTACAA 1702 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| ||||| || | || ||| Sbjct 1703 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGGC 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498894133245440