Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_014229.1 Length=37068 Score E Sequences producing significant alignments: (Bits) Value seq3723 147 5e-31 >seq3723 Length=1841 Score = 147 bits (162), Expect = 5e-31 Identities = 354/535 (66%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 20602 TTCACGCGAACACGACTATCGGCGTGGAGGCCACGCGGGAGTTCGTGCGCGAGACCTGCG 20661 ||||||| ||||| || |||||| | || | || | ||||||||||||| |||||| Sbjct 946 TTCACGCAAACACTACCATCGGCATTGAAGAAACCAGACAGTTCGTGCGCGACACCTGCA 887 Query 20662 CCGGATGGGGTCTGCCGCTCCTGGAGAAGCGTCCGCA--GGCGTCGTACCGGGACCTCGT 20719 | |||||| ||||| | || ||| || | | | || || | |||| | | || Sbjct 886 CGCAATGGGGATTGCCGTTGCTTGAGGAGACTGCTCCCCGGAGT--TTCCGGCAGTTGGT 829 Query 20720 CCTGGAGCGAGGCTTCCCAGGTCCCGGGCAGCACTTCAAGATGTACCAGCGGCTGAAGGA 20779 |||| | || ||||| || || ||| ||||| || ||||||||||| || || || Sbjct 828 GATGGATCAGGGTTTCCCTGGCCCAGGGATGCACTGGAAAATGTACCAGCGACTCAAAGA 769 Query 20780 GCGGTGCTTGGAGCAAGCGCGCTCGGAGCTGGTTGGGAATCCCTTCAAGGAGCGGGTCCT 20839 ||| || ||||||||| | |||| |||| || | |||||||| ||||| Sbjct 768 GCGTCCGCTGCGGCAAGCGCGTAGGAAGCTCGTTGCAGATAGCGGAAAGGAGCGTGTCCT 709 Query 20840 CTTCCTTGGCGGCCGGAGGCGTAGTGAGTCGCGCCGACGTGCTGGCCTCGCAGCGTCGGA 20899 ||| | | ||| || |||| ||| || || || | | | | || || Sbjct 708 ATTCATGGCCGGTCGTCGGCGGCTTGAATCTGAACGGCGATCAGATATTCCTTTGTATGA 649 Query 20900 CCGCAAGGGCTCCATGGTGTTCACGTCGCCACTGGTCCTCTGGACGAAGCTGGACATGAA 20959 ||| | || || || | | ||||||| || | | | ||| | ||||| || ||||| Sbjct 648 ACGCGAAGGGTCTGTGATTTGGGCGTCGCCTCTCGCCATGTGGTCAAAGCTCGATATGAA 589 Query 20960 CACGTACCGGCTGATGTGCGGTGAC---------GTGCCCGTTAACGAGGTCAGCGAACT 21010 || || ||||| ||| | ||| | || || || || ||| ||| || Sbjct 588 TACCTATCGGCTCATGCACCGTGGCACGGACCCTGTTCCAGTGAATAGGGTGTCCGATCT 529 Query 21011 GATCCACATGTCTGGGGAGTGCCTCTGCGGCTCCTTCGCCACGAAGGGGGAGCTGGAGGA 21070 |||||||||||| ||||||||| | ||||| | ||||||| | || || ||| | || Sbjct 528 GATCCACATGTCGGGGGAGTGCTTGTGCGGTGCGTTCGCCAAGCCGGACGAACTGCATGA 469 Query 21071 GGTTGGCTTCTGGTTCCCGCAGGTTCGCGAGGAGATCGAAGCGCTGGAGGAGGAG 21125 | | ||| ||||||||| ||||||| | |||||||| || || || |||| Sbjct 468 GATCGGCGCATGGTTCCCGGAGGTTCGGCATGAGATCGAGGCATTGCAGCGGGAG 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118208217355760