Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq106697 156 3e-32 seq56668 134 1e-25 seq201472 91.5 1e-12 >seq106697 Length=3139 Score = 156 bits (172), Expect = 3e-32 Identities = 671/1040 (65%), Gaps = 27/1040 (3%) Strand=Plus/Plus Query 517271 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 517330 || || || |||||||||| || || || || | ||| || || || ||||| | || Sbjct 911 AGGATGCCGTTGGCATCCAGGTCGAAGGTCACCTGAATCTGGGGCACTCCTCTTGGTGCC 970 Query 517331 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 517390 |||||||| || || | || || ||||| | || || || || | ||| Sbjct 971 GGTGGGATGCCCATCAGGTCGAAAGTGCCCAGGAGGTGGTTGTCCTTGGTCATGGCGCGT 1030 Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 ||||| ||||| | || || || || ||| || || || | || || || ||| Sbjct 1031 TCACCTTCGAACACCTGAATGGTGACGGCAGGCTGGTTGTCCGCGTACGTCGTGAATGTC 1090 Query 517451 CTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCT 517510 ||||| | || ||||| || |||| | || | || || | ||| | ||||||| Sbjct 1091 TTGGATGTCTTGCAAGGTATGCGGCTGTTACGCTCTACGATCTTCGCCATTACACCACCT 1150 Query 517511 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT-TTTGAAGTTT 517569 || ||||| | || || |||||||| | || || || || | | | ||||| | Sbjct 1151 GCGGTTTCGATTCCCAGTGAAAGAGGGGCAACGTCGACGAGCAACACGTCTTTGATAATA 1210 Query 517570 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 | || || | || ||||||||||||||||| || || || || ||||||||||| Sbjct 1211 TCGCTC-GTGTCTCCTGTTAGAATAGCTGCTTGAATCGCTGCTCCGTAAGCAACAGCTTC 1269 Query 517630 ATCAGGATTAACAGTTTCAT--TTAGTTTTTTACCATTGAAAAAAT--TTGAAAGAAGTT 517685 ||| ||||| | | ||| ||| | ||||||||||| || | ||| || || | Sbjct 1270 ATCGGGATTGATGG--ACATGGCTAGGTCCTTACCATTGAAGAAGTCCTTG--AGTAGCT 1325 Query 517686 GTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| | | | || || || | ||||| || || | || || ||||| | || || Sbjct 1326 -TCTGAATTCTTGGGATGCGCGTAGATCCACCCACCAGCACGATCTCATGTATTTGGGAC 1384 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAA 517803 || | || ||||| ||| || |||| || || ||||| | | ||| | || | Sbjct 1385 TTTCCGAGCTTTGAGTCCTGTAGCGCTTTCTCTACAGGTTCCA-AGGTGCTGCGGAATAG 1443 Query 517804 GTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTT 517862 ||| ||| | ||||||||| | ||||| || | || | || || |||||||| | Sbjct 1444 GTCCATACACATTTCTTCGAACCTGGCTCTTGTGATTTTG-CTGTAGAAGTCAATTCCAT 1502 Query 517863 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 517922 | || | || || | ||| || | | || || || |||| || || |||| Sbjct 1503 CAAAGAGAGCGTCGATTTCGATGCTCGCTTCTGTGCTGCTCGAGAGTGTTCGCTTTGCAC 1562 Query 517923 GTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-ATTCAAATCTGTTTTA 517981 |||| || || || || || | || | |||| | | || ||| |||| || || Sbjct 1563 GTTCGCAGGCAGTTCTAAGGCGTCTGATGGCTCTCG-TGTTTGTTTTCAGGTCACGCTTG 1621 Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 518041 | || || |||| ||||| || | | | || || || ||||| || ||||| || Sbjct 1622 TGCTTCCTTGTGAACTCTTCGACGAAGTAGTTCACCAGCCGGTTATCGAAGTCTTCCCCC 1681 Query 518042 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTTCAAGAGAC 518098 || | | || | ||||| || | | || | ||| | | || || |||| || Sbjct 1682 CCGAGATGCGTGTCTCCTGCTGTGGAGCGAACCTCGAACATTGAACCTTCGTCAATAGTG 1741 Query 518099 AAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 518158 | || | ||||| || || ||||||| || || || || || || |||| | | Sbjct 1742 AGAATGGACACATCGAAAGTGCCTCCACCCAGGTCGAATATTAGCACGTT--TTTC-TCG 1798 Query 518159 TCTT---GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| |||| || || | || ||||||| ||| || || || || ||||| || || Sbjct 1799 CCTTTCAGGTTCTTGTCCAAGCCGTACGCAAGAGCGGCTGCGGTGGGCTCATTGATGATG 1858 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | | || || || || |||||| ||| || ||||| |||||||||| || || ||| Sbjct 1859 CGAAGTACGTTGAGGCCCGCAATTGCTCCGGCGTCTTTCGTGGCTTGTCGCTGAGAGTCG 1918 Query 518276 TTAAAATATGCAGGAACAGT 518295 || || || ||||| || || Sbjct 1919 TTGAAGTAAGCAGGCACCGT 1938 >seq56668 Length=3325 Score = 134 bits (148), Expect = 1e-25 Identities = 132/170 (78%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 518153 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 518212 ||||| ||||| |||||| | |||||| |||| ||||||||||||||||| |||||| Sbjct 3145 TCTTTATCTTG---TTTATCTAAACCATAAGCAATGGCAGCAGCAGTTGGTTCGTTAATA 3089 Query 518213 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 518272 ||||| || || | || ||||| ||||||||| |||||| |||| | |||| | Sbjct 3088 ATTCTTTCTACTTTTAATCCCGCAATAATTCCTGCATTTTTAGTAGCTTCACGTTGTTCA 3029 Query 518273 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 | |||||| || ||||||||||||||||| || | | || || |||||| Sbjct 3028 TTGTTAAAGTAAGCAGGAACAGTAATAACTGCTTTTGATATTTTTTTACC 2979 >seq201472 Length=3412 Score = 91.5 bits (100), Expect = 1e-12 Identities = 182/269 (68%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 518175 |||||| || || | ||| || | ||| | ||| | ||| |||| | || || || Sbjct 2287 GGTTCCTCCTCCAAGATCGAAGACAAGAATGTTCTTCTCTCCCTCTT---TCTTGTCCAG 2231 Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 ||| || || | |||||||| || ||||| || || || | || ||||| |||||||| Sbjct 2230 ACCGTAGGCGATGGCAGCAGCTGTGGGTTCGTTGATGATACGCATCACATTGAGACCAGC 2171 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 ||| |||| ||||| || |||||||| | || | ||||| || || || || || || Sbjct 2170 AATGGTTCCGGCATCCTTGGTGGCTTGACGCTGGGCGTCGTTGAAGTAGGCTGGCACGGT 2111 Query 518296 AATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACT 518355 | ||||| | || |||| || || | || || || |||| ||||| || | Sbjct 2110 CACGACGGCGTGGGTCACTTTCTTGCCCAGGTAGGCCTCGGCAGTTTCCTTCATCTTTGT 2051 Query 518356 TAAAATCATTGATGAAATTTGTTCTGGGG 518384 || | ||| | || || | ||| |||| Sbjct 2050 CAACACCATGGCAGAGATCTCTTCAGGGG 2022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3770673642404296