Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq106697 286 4e-72 seq99573 224 1e-53 seq53522 161 1e-34 seq38113 123 3e-23 seq173627 105 8e-18 seq126472 105 8e-18 >seq106697 Length=3139 Score = 286 bits (316), Expect = 4e-72 Identities = 817/1238 (66%), Gaps = 35/1238 (3%) Strand=Plus/Plus Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | |||||| ||||||| ||| || || ||||| | ||||| | ||| |||| Sbjct 1138 CATTACACCACCTGCGGTTTCGATTCCCAGTGAAAGAGGGGCAACGTCGACGAGCAACAC 1197 Query 6988 GTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTA 7047 ||||| | | ||| || || || |||| || || ||||| | || || ||||| Sbjct 1198 GTCTTTGATAATATCGCTCGTGTCTCCTGTTAGAATAGCTGCTTGAATCGCTGCTCCGTA 1257 Query 7048 TGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGA 7107 || || || |||||||| || || | | || || ||||| || || | ||| Sbjct 1258 AGCAACAGCTTCATCGGGATTGATGGACATGGCTAGGTCCTTACCATTGAAGAAGTCCTT 1317 Query 7108 TAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 | | | |||||| | ||||| || || |||||||| |||| ||||| |||| | Sbjct 1318 GAGTAGCTTCTGAATTCTTGGGATGCGCGTAGATCCACCCACCAGCACGATCTCATGTAT 1377 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG 7227 || || || ||| ||||||||| | || | ||| || |||||||||| | || Sbjct 1378 TTGGGACTTTCCGAGCTTTGAGTCCTGTAGCGCTTTCTCTACAGGTTCCAAGGTGCTGCG 1437 Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 ||| | ||||||||||| ||| || || | || | || || | ||||| |||| Sbjct 1438 GAATAGGTCCATACACATTTCTTCGAACCTGGCTCTTGTGATTTTGCTGTAGAAGTCAAT 1497 Query 7288 GCCGTCGTATAACGAATCAATTTCAATGGTTGTTT--GTGCCG-TCGAAGATAACGTTCG 7344 || || | | | || ||||| ||| | | || |||| | |||| | ||||| Sbjct 1498 TCCATCAAAGAGAGCGTCGATTTCGATGCTCGCTTCTGTGCTGCTCGAGAGT---GTTCG 1554 Query 7345 CTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATC 7404 |||||| || || || || |||| | || | | ||| | || ||| | || Sbjct 1555 CTTTGCACGTTCGCAGGCAGTTCTAAGGCGTCTGATGGCTCTCGTGTTTGTTTTCAGGTC 1614 Query 7405 TTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATC 7464 ||| || || | | | |||||||| ||||| | || | |||||| || Sbjct 1615 ACGCTTGTGCTTCCTTGTGAACTCTTCGACGAAGTAGTTCACCAGCCGGTTATCGAAGTC 1674 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT---ACCTCCTTC 7521 ||| || || | || || || || || || | || || || || |||| | || Sbjct 1675 TTCCCCCCCGAGATGCGTGTCTCCTGCTGTGGAGCGAACCTCGAACATTGAACCTTCGTC 1734 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 ||| | | | || ||||| || || || ||||||||||| || || || ||||| | Sbjct 1735 AATAGTGAGAATGGACACATCGAAAGTGCCTCCACCCAGGTCGAATATTAGCACGTT--T 1792 Query 7582 ATCGTCGTCTTT---GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 || ||| |||| |||||| || | |||||||| | ||| || || || || ||||| Sbjct 1793 TTC-TCGCCTTTCAGGTTCTTGTCCAAGCCGTACGCAAGAGCGGCTGCGGTGGGCTCATT 1851 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || || ||||| ||| ||||| ||||| | | | || |||||||| |||||||| || Sbjct 1852 GATGATGCGAAGTACGTTGAGGCCCGCAATTGCTCCGGCGTCTTTCGTGGCTTGTCGCTG 1911 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || ||||| ||||| || || ||||| || || ||||| |||| |||| |||||| | Sbjct 1912 AGAGTCGTTGAAGTAAGCAGGCACCGTGACCACAGCGTCGCTGACCTTCTGACCGAGGAA 1971 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT--CGATGAAATCTCTTCAGC-CGC 7815 | ||||| | || ||||| ||||| || ||||| || || || ||||| || Sbjct 1972 GGCCTCCGCAGTTTCCTTCATCTTGGTCAGCACCATGGCGCTG--ATTTCTTCCGCGTTG 2029 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 ||| | ||||| || || ||||| || || || |||| || || | || | Sbjct 2030 AAAATCTTTCG-CTCTCCTTTAAACTCCACGCTGATGTTGGGCTT----GC--CTCCTTG 2082 Query 7876 ---GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 ||| | ||| ||| ||| | || || || | |||| || |||| |||| Sbjct 2083 ATTGATTAGTTTAAACGGCCAGTGCTTGATGTCCTGCTGGATCTTGGGGTCATCGTACTT 2142 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 || || || || | ||| || ||||| || ||||||| ||| || | || ||| Sbjct 2143 CCTACCAATGAGTCTCTTGGCGTCAAACACAGTGTTTTCGGGATTGAGAGCCACTTGCGC 2202 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051 || |||| ||| ||||| || | || | | || || || |||||||| | |||| | Sbjct 2203 TTTAGCCGGGTCACCGATGAGCC--TC-TCGGTGTCTGTGAAGGCGACGTA-GCTGGGCG 2258 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || ||||| ||||| || || || || || || | | ||| || |||| || | Sbjct 2259 TGGTCCGGTTCCCCTGGTCATTGGCGATGATCTCCACCCTGCCGTGCTGGAAGACTCCCA 2318 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 | || || |||||||| || | || |||||||| ||| Sbjct 2319 CACATGAGTACGTTGTACCGAGGTCGATACCGATGGCT 2356 >seq99573 Length=2860 Score = 224 bits (248), Expect = 1e-53 Identities = 292/404 (72%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || |||||||||||||| || || || |||| ||||| || ||||| || Sbjct 1407 TCGAAGTCCTCGCCACCCAAGTGTGTGTCACCGGCCGTCGACTTGACCTCGAAGATTCCG 1466 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || ||||| || || || || |||| ||| || ||||| ||| Sbjct 1467 TCCTCGATGGTCAGAATGGACACATCGAAGGTTCCGCCGCCCAAGTCGAAGATGAGCACG 1526 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| ||| || |||| || || ||||| ||||| || ||||| || || ||| Sbjct 1527 TTCCGTTCGCCGGTCCCCCTCTTGTCCAGGCCGTAGGCGATGGCTGCCGCTGTCGGCTCA 1586 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| |||||||| || || | || || || || ||||| || Sbjct 1587 TTGATGATACGGAGGACGTTGAGGCCAGCGATTGTGCCGGCGTCCTTGGTTGCTTGGCGC 1646 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||| ||||| ||||||||||| || ||||| || |||| ||||| |||| |||||| Sbjct 1647 TGCGAGTCGTTGAAGTAGGCCGGAACAGTTACCACGGCGTTGGTGACGGTCTTGCCGAGA 1706 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || || || ||||| ||||| || |||||||| || |||||||| | Sbjct 1707 TAGGCCTCTGCAATTTCCTTCATCTTGGTGAGCACCATCGACGAGATCTCTTCGGGGAAG 1766 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || |||||| || || ||| | ||||| | ||| |||| || Sbjct 1767 AAGGTTTTCGTCTCGCCCTTATATTCAACCTGGATCTTGGGCTT 1810 >seq53522 Length=4295 Score = 161 bits (178), Expect = 1e-34 Identities = 320/464 (69%), Gaps = 16/464 (3%) Strand=Plus/Minus Query 11221 TGTACTTTGAGTATTTCTTCACGTCCGTGAACATCAGGTAAAGAAACTTGTATTTTACGA 11280 |||||||| || |||| ||||| |||| | ||| || | ||| |||| |||| Sbjct 1999 TGTACTTTTAGAATTTGCTCACGACCGTTTATATCGGGGTTTGCAACGGCAATTTGACGA 1940 Query 11281 TCAAATCTACCGGGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACCT 11340 ||||| |||||||| |||| ||| ||| || || | ||| ||||||||| || | Sbjct 1939 TCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGACGGTTTGTAGCTGCA 1880 Query 11341 ATAACAACAATTTCA--GTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAA 11398 || | |||| | | |||| ||| || || |||||||| ||| | |||||| | Sbjct 1879 ATGATCACAACTCCCTCGTTTGCTTCA--AATCCGTCCATTTCGACTAACATTTGGTTTA 1822 Query 11399 TTGTTTGTTCACGCTCATCGTTTGCCGCAAACCCATTC--ATACTTCTTTTCTTACCAAT 11456 ||||| ||||| ||||| || ||||| ||||| | |||| ||| | ||| | Sbjct 1821 AGGTTTGCTCACGTTCATCATT-GCCGCCG-CCCATACCGATACCTCTATGGCGACCTAC 1764 Query 11457 CGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTG---CCAATTCAAA 11513 ||||||||||||||| |||||||||||||| || ||| |||| || |||||| Sbjct 1763 CGCATCAATTTCATCGATAAAGATAATACAAGGAGCATT---ACGTTTACCCTGTTCAAA 1707 Query 11514 TATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGA 11573 || | ||| || | |||| || || ||||||||||||||||| || || || || Sbjct 1706 CATGTTACGCACACGGCTTGCACCGACACCTACAAACATTTCAACAAAATCAGAGCCGGA 1647 Query 11574 ACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACC 11633 | || ||| ||||| || ||||| || || || || | |||||| ||||| Sbjct 1646 TATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCTTTAGCAAGAAGTGTCTTACC 1587 Query 11634 TGTACCTGGTTTACCTGTTAATAATGCACCCCTT-GGTATTTTA 11676 || || || |||| | | ||| ||| || || ||||||||| Sbjct 1586 GGTTCCAGGAGGACCTATAAGTAA-GCAGCCTTTCGGTATTTTA 1544 >seq38113 Length=1291 Score = 123 bits (136), Expect = 3e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| |||||||| || ||||| || || ||||||||||| || || || || || ||| Sbjct 1098 CTTGTCGAGACCATAGGCGATGGCGGCGGCCGTTGGTTCGTTGATGATGCGCAGGACGTT 1039 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || || || || | || || || ||||| ||||| ||||||||||| |||||||| Sbjct 1038 GAGACCGGCGATCACCCCGGCGTCCTTTGTCGCCTGTCGCTGCGAATCGTTGAAGTAGGC 979 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||| ||||| || ||||| ||| || ||||| || || || || | || || Sbjct 978 CGGCACCGTGACTACCGCAGCCGAGATCGGGCCGCCGAGGTAGGACTCGGCCGTCTCCTT 919 Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||| ||| | || ||||| || ||||||||||| Sbjct 918 CATCTTGTTGAGCACCATGGAGGAAATCTCTTC 886 >seq173627 Length=4584 Score = 105 bits (116), Expect = 8e-18 Identities = 181/259 (70%), Gaps = 13/259 (5%) Strand=Plus/Minus Query 11233 ATTTCTTCACGTCCGTGAACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCG 11292 ||| |||||||| | | || ||||||| || | |||| ||||||||||||||| Sbjct 3879 ATTGCTTCACGTTCTTTAATATCAGGTCAACTTAAAGAAATTTGACGATCAAATCTACCT 3820 Query 11293 GGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATT 11352 || |||||||| || || || |||| ||| ||||| || ||| | |||| || || | Sbjct 3819 GGACGTAATAATGCTTCATCAAGTACATCAGCGCGGTTAGTAGCAGCCATAATAATAACT 3760 Query 11353 TC--AGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCAC 11410 | |||| | | || || ||||||||||| |||||||||||| | |||||| Sbjct 3759 CCCAAGTT--AGTTTCAAATCCATCCATTTCAACTAATAATTGGTTTAAAGTTTGT---- 3706 Query 11411 GCTCATCGTTTGCCGCAAACCCATTCATACTTCTTTTCTTACCAATCGCATCAATTTCAT 11470 |||| |||| | | | | | | ||||||| || | ||||||||||||| Sbjct 3705 --TCATTAGTTGCAGTTGAAGC--TGAGGCACGTTTTCTT-CCTACTGCATCAATTTCAT 3651 Query 11471 CTATAAAGATAATACACGG 11489 | ||||| |||||||| || Sbjct 3650 CAATAAAAATAATACAAGG 3632 >seq126472 Length=4030 Score = 105 bits (116), Expect = 8e-18 Identities = 486/760 (64%), Gaps = 26/760 (3%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| | ||||| || ||||| || || | ||||||||| || | || | | | Sbjct 1771 TCATCCTGCTCTTTGTAGTTTTCGCTGTCATGAATCATCTTTTCGATCTGG-CTCTTGGT 1829 Query 6629 AATCTC-CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | ||||| || || || || || ||||| | ||| || ||| | ||| || | Sbjct 1830 AAGCCGGCCCTTGTCGTTTGTGATGGTGATCTTCTTGGACTTTCCCACGCTCTTCTCGAC 1889 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || |||| |||||| || || || | ||||| | || | || || || Sbjct 1890 GGCCGAAACGTTCAGAATACCGTTGGCGTCGATGTCGAAAGTCACCTCTATCTGAGGGAC 1949 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 |||||||||||| | || || ||| | | | || ||||||| | |||| || | Sbjct 1950 ACCCCTCGGTGCCGACGGTATTCCCTTGAGCGCGAACTTACCAAGCAGGTTGTTGTCTTT 2009 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACC--GCAGGTTGATTATCTT 6863 | | ||| ||||| ||| |||| | ||| | ||| || ||||| ||| Sbjct 2010 GGTGAGCGCACGCTCACCCTCAAAGACCTGAATGAGGACACTTTGCTGGTTG----TCT- 2064 Query 6864 GTGC-CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACC 6922 ||| ||||| |||||| | || || | ||||| || || || | | || | | Sbjct 2065 GTGTACGTTGTGAAGATGCGCGTCTTGTTTGTGGGAATGGTGGTGTTCCGCATGATCAGC 2124 Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 ||||| | || || ||| || | || || ||||| || || || || | ||| Sbjct 2125 ACTGTCATTACTCCCCCTGCAGTCTCAATGCCGAGGGACAGGGGCGTGACATCGAGGAGC 2184 Query 6983 AACAGGTCTTGAACAGATTCGTTC-CCTTCAC--CCGTTAAGATGGCGGCTTGGACCGTC 7039 | ||||| || || ||| | |||| | |||| |||||||||||||| |||| Sbjct 2185 AGAAGGTCCTGGAC---TTCAACCGCCTTGCCGTCCGTCAAGATGGCGGCTTGCACCGCG 2241 Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || || || ||||| || | || || || ||||| || ||||| Sbjct 2242 GCTCCGTAAGCTACGGCTTCGTCAGGGTTGATGGACTTGTTAAGCTCTTTGCCATTAAAG 2301 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | | | ||| || || ||||| | ||||| || ||||||| ||||| Sbjct 2302 AAGTCCTGGATGAGTCTTTGGATCTTGGGGATCCTGGTCGACCCGCCGACCATGACGATC 2361 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTC----TCGAAGTGTTTTTTCGACAGGTTC 7215 || || || | | || || ||| | ||| | || | ||| | |||||| Sbjct 2362 TCGTTTACGTCCTGCTTGCTGAGCTTGGCGTCGGATAAGCAGCG----TTCCAGAGGTTC 2417 Query 7216 CATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGT 7275 || ||||||| ||| || || || || |||||||| ||||| | ||| Sbjct 2418 TATGGTCGACCGGAACAGGTCGGAGTTGAGCTCTTCGAACCGTGCACGAGTAATAGTTGT 2477 Query 7276 ATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 ||||| || | ||||||| | | || || || |||||| Sbjct 2478 GTAGAAGTCGATGCCGTCGAAGAGGGAGTCGATCTCAATG 2517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633509114753440