Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq20354 96.9 4e-15 seq53522 84.2 3e-11 >seq20354 Length=4240 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 |||| ||||| || |||| |||||| || ||||| ||||||||||| || || || Sbjct 1409 TTTGGCGAGCGCATCGTCGCGTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGATCGTT- 1467 Query 102234 TGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| | || | ||||| |||||||| || |||||||| || ||| |||| |||||| Sbjct 1468 TGCGTCCATCTTCTGGCTGAAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGA 1527 Query 102293 GCTTATCTCTCGTGACGAGG 102312 ||| ||| ||| ||||||| Sbjct 1528 GCTCATCAGTCGAGACGAGG 1547 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 102537 AACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTC 102596 ||||| |||| || || |||||||||||| ||||| | | || ||||||||||||||| Sbjct 3152 AACTCGGAGAACCCTTTCGACTTCATGGAGCACATTTCCTTGGAAGGGAAGACAAACTTC 3211 Query 102597 TTCGAAAAGAGGGTTGGGGACTA 102619 || || |||||||| ||||| || Sbjct 3212 TTTGAGAAGAGGGTCGGGGAGTA 3234 >seq53522 Length=4295 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/370 (66%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| | ||| || || || | || |||||| | |||| || || || || Sbjct 1943 ACGATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGACGGTTTGTAGC 1884 Query 15944 GGCGATGACAACAA-TACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || |||| |||| | ||| || | | ||||| || ||||| || || | |||| Sbjct 1883 TGCAATGATCACAACTCCCTCGTTTGCT-TCAAATCCGTCCATTTCGACTAACATTTGGT 1825 Query 16003 TAATAGTTTGTTCCCGTTCATCATT--CGCTG-GCATACCACCAGCACTGCGTTGCTTTC 16059 | | ||||| || ||||||||||| ||| | |||||| | | || || | Sbjct 1824 TTAAGGTTTGCTCACGTTCATCATTGCCGCCGCCCATACCGATACCTCT---ATGGCGAC 1768 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | || |||||||| ||||| || |||| || || || ||| | | ||||| Sbjct 1767 CTACCGCATCAATTTCATCGATAAAGATAATACAAGGAGCATTACGTTTACCCTGTTCAA 1708 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | | | || ||||| | || || ||||| |||||||| || ||||| | | | ||| Sbjct 1707 ACATGTTACGCACACGGCTTGCACCGACACCTACAAACATTTCAACAAAATCAGAGCCGG 1648 Query 16180 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | | | || || ||||||| ||||| ||||| ||| || ||||| ||||||| Sbjct 1647 ATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCTTTAGCAAGAAGTGTCTTAC 1588 Query 16240 CCGTACCTGG 16249 | || || || Sbjct 1587 CGGTTCCAGG 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619155503091520