Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq53522 116 4e-21 seq20354 91.5 2e-13 >seq53522 Length=4295 Score = 116 bits (128), Expect = 4e-21 Identities = 263/390 (67%), Gaps = 24/390 (6%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | |||||| || | ||| || || |||| ||| |||||||| ||| |||||| Sbjct 1949 AATTTGACGATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGACGGTT 1890 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 |||||| ||||||| |||| || ||| || || || ||||||||||| | Sbjct 1889 TGTAGCTGCAATGATCACAACTCC---CTCGTTTGCTTCAAATCCGTCCATTTCGACTAA 1833 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTT---GGAGGGCATACC---ACCTGCCGA 11666 | ||||| | || || ||||| ||||| || | | |||||| |||| | | Sbjct 1832 CATTTGGTTTAAGGTTTGCTCACGTTCATCATTGCCGCCGCCCATACCGATACCT--CTA 1775 Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 || ||| || || ||||| |||||||| || | ||||| || || ||| Sbjct 1774 TGGC----GACCTACCGCATCAATTTCATCGATAAAGATAATACAAGGAGCATT---ACG 1722 Query 11727 T---GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAAC 11783 | ||||||| || | | ||| ||||| | || || |||||||| ||||| ||||| Sbjct 1721 TTTACCCTGTTCAAACATGTTACGCACACGGCTTGCACCGACACCTACAAACATTTCAAC 1662 Query 11784 GAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGC 11843 || | | | | || | || || |||||||||| |||||| || || ||| ||| Sbjct 1661 AAAATCAGAGCCGGATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCTTTAGC 1602 Query 11844 GAGGAGAGTCTTACCCGTACCAGGTGCACC 11873 || || |||||||| || ||||| | ||| Sbjct 1601 AAGAAGTGTCTTACCGGTTCCAGGAGGACC 1572 >seq20354 Length=4240 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/198 (72%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 || || ||| ||||||||| || |||||| || || ||||||||||| | ||||| Sbjct 1545 TCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCTTC 1486 Query 119577 AGCCAAAAGATGGCACAAAAACT-TCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGC 119635 ||||| ||||||| || |||| ||| || |||||||||||||| || || || || Sbjct 1485 AGCCAGAAGATGG-ACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACGC 1427 Query 119636 GAATAGACGCTCAGCAAAAG-GTCGAGAC--TTGTCGAACCACTTGAGAGCCCAGTTGGC 119692 || | ||||| |||| | | || | ||| ||| ||| || || ||||||| || Sbjct 1426 GACGATGCGCTCGCCAAATGTGGCGCTCCGGTTGCCGATCCAGTTCAGTGCCCAGTCTGC 1367 Query 119693 CTTACGCTCTATGCAGGG 119710 || | || |||||||| Sbjct 1366 TTTCCTCTTAATGCAGGG 1349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587470312304800