Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1065 86.0 7e-12 seq20354 82.4 9e-11 >seq1065 Length=2691 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | | || || |||| |||| | ||| || || || | ||||| ||| Sbjct 1075 GTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTGG 1016 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||| ||||||| ||||||||||| |||||||| || || |||||||| |||| Sbjct 1015 TTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCCCGTCTCTATCTGC 956 Query 106625 GACTTGAGAATTGCCTTCCACA 106646 |||| || || || | ||||| Sbjct 955 GACTCCAGGATGGCGTACCACA 934 >seq20354 Length=4240 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 117328 AGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAA 117386 ||||| |||||||| ||||||||||||| ||| | || | |||| || || || ||||| Sbjct 1512 AGGCCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGGACGCA-AACGATCCCGAGAA 1454 Query 117387 GAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTG 117445 |||||| ||||| || ||||||||| | | ||||||| | || | ||| | | Sbjct 1453 GAAGATGCCCTCGACGGCCGCAAACGCGACGATGCGCTCGCCAAATGTGGCGCTCCGGT- 1395 Query 117446 TGTCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 117491 || | | ||| |||| |||||| | || ||| ||| ||| || || Sbjct 1394 TGCCGATCCAGTTCAGTGCCCAGTCTGCTTTCCTCTTAATGCAGGG 1349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588472543583840