Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_015210.1 Length=61440 Score E Sequences producing significant alignments: (Bits) Value seq133315 392 1e-104 seq70437 158 5e-34 seq539 96.9 1e-15 >seq133315 Length=1321 Score = 392 bits (434), Expect = 1e-104 Identities = 569/800 (71%), Gaps = 10/800 (1%) Strand=Plus/Minus Query 17081 TGGCGACTTTCCCCCTCGTGAAGGGCACCCGCCTTCGCGCGACGCGGATCAACTCGTGTG 17140 |||| || ||||| | |||| |||| | || ||||| || | ||||| || | Sbjct 1022 TGGCAACATTCCCGATGCTGAAAGGCATCAAGCTCCGCGCCACCAAGGTCAACAGTTGCG 963 Query 17141 GTCTGCCCGTGGCCGG-GCCGAACGGCTACCTGGTCACCGACGGGTTCGTGACCGCCAGC 17199 | || ||||| | || |||| | ||| ||| ||||||||| |||||| | || Sbjct 962 GGCTCCCCGTCGAGGGCGCCGG-CAACTATCTGACCACCGACGGTTTCGTGTCGTTCAAA 904 Query 17200 ATCTCGGCCGTCATGAAGGACGCCGAGGAGCTGGAGCAGACCAACGCCGAGGGCCGCGTG 17259 || || || |||||||||||| | ||| | |||||| ||||| |||| | ||| Sbjct 903 ATGTCCCCCAACATGAAGGACGCGAACGAGATCGAGCAGGAGAACGCGCAGGGACAGGTG 844 Query 17260 TGCGTCTCCGAGCGCACCCCGCCCGAGCGCAAGTACTACACGCTCTCGCTGGAGCTGTGC 17319 ||| || |||| |||||||||||||||||||||| ||| ||| ||||| |||||| Sbjct 843 TGCATCACCGACCGCACCCCGCCCGAGCGCAAGTGGTACGACCTCGAGCTGGCCCTGTGC 784 Query 17320 AACGTGAACACCGAGCTGATCTCGATGTTCAACGGATGGCAGCAGGTTCTCGACTACGAC 17379 |||||| ||||||||||| | ||| |||||| ||| |||||| |||||||| | Sbjct 783 GGGGTGAACTCCGAGCTGATCACCATGCTCAACGCGTGGAAGCAGGAAGTCGACTACAAG 724 Query 17380 GACAAGGCCGTGGGCTTCCGCGACCAGTCGACCGTCGAATCCGACTTCGGCGTGGCGCTG 17439 | | | | || ||||||||||||||| | ||||||||| |||| ||| ||||| ||| Sbjct 723 GGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGTCGAATCGGACTACGGTGTGGCCCTG 664 Query 17440 GAGATCTGGACCGGCGGCAAGGCCGAGGACGACTGCCCGACGCCGACCGACGACTCGATC 17499 || ||||||||||||||||||||||| ||||| ||||| || || |||| |||| || Sbjct 663 GAAATCTGGACCGGCGGCAAGGCCGACGACGATTGCCCCACCCCCACCGGCGACGATATT 604 Query 17500 TTCACCGCTGCCGCGAGCGGTCGCCAGTACGGCTACCTGCTCATCGGTGGCACCGAGTGG 17559 ||| || | | || ||| |||| || |||||||| | | |||||||||| Sbjct 603 TTCGCCACGAGCACGTCCGGCAAAAAGTATGGGTACCTGCTGACGTGGGGCACCGAGTTC 544 Query 17560 GTTCCGGGCGACATCGAGATCGGCGCGCAGGTGTCGACCTTCACGCTGTCCGGCATC--- 17616 | |||||||| ||| | ||| | || | | |||||| || || |||||| Sbjct 543 ACGCTCGGCGACATTGAGGTACAGGCGGACGTCGCCAACTTCACCCTCTCGGGCATCAGC 484 Query 17617 -TCGGTGGCGATGCCGCAGTGGGGCCGTGGTCCCTGGAACGTCGCGGCGACCGACGCCGC 17675 ||| |||| ||||||||||| ||||| || ||||| || | || | ||| | || Sbjct 483 ATCGCTGGC----CCGCAGTGGGGTCGTGGCCCGTGGAATGTTGTCGCCATCGATGACGA 428 Query 17676 CGGTACGCCGGGCCGTCTGCTCACCCCGCTGGACGACGACTCGCACTACACGATGTTCCG 17735 | ||| | ||||||||| |||| || | ||| || ||| ||| | || || || Sbjct 427 CAACACGGCTGGCCGTCTGATCACTCCTCCGGATGATGACCAGCATTTCATTCTGCAGCG 368 Query 17736 CACCCCGGTCGCGCCCCCGGAGAACACCCCCGGTGCGTGCCCGCTGGACATCGCGACCAC 17795 ||||||| ||||||| |||||| || || || ||| |||||||||| | ||| Sbjct 367 CACCCCGATCGCGCCGCCGGAGTCGACACCGTCCGCCTGCGAGCTGGACATCACCGGCAC 308 Query 17796 GTTCGTGGCCCCGAACTTCTACTTCGGTGGTCCGTCGAACGCCCCGGCCGCGGATGTCGC 17855 |||| || ||| |||||||||||||||| ||| | | || ||||| || ||||| || Sbjct 307 GTTCCAGGATCCGGACTTCTACTTCGGTGGGCCGGAGGATGCACCGGCTGCTGATGTGGC 248 Query 17856 CCCGGCGCAGCCCGCCTGCG 17875 |||| ||||||| |||| Sbjct 247 GCCGGATCAGCCCGAGTGCG 228 >seq70437 Length=1356 Score = 158 bits (174), Expect = 5e-34 Identities = 241/338 (71%), Gaps = 13/338 (4%) Strand=Plus/Minus Query 10900 CCGCACCTTCACCAGCGCGGCCATCGGGGTGATCGGCGAGCCCACGAGCGACGGACGGAT 10959 ||| || |||||| ||| || ||| | ||||| |||| |||||| || || Sbjct 456 CCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCAT 397 Query 10960 GTTCGCGGCCGACATCGACCTCTCGTTCCGCGACTTCCCGCTGGCGCTCATGTGGACCAA 11019 | |||| | ||||||||| || | |||||| |||||| ||| |||| |||||| || Sbjct 396 GCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAA 337 Query 11020 GCAGACCAGCCAGGGCCACGAGCAGGCGTACACCGTCGGCGTCATCG-AGACG---GCGT 11075 ||||||| || || ||||| | || ||||| ||||||||||||| || || | || Sbjct 336 GCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGT 277 Query 11076 CGATCGCCAACGGCAAGATCATCGCCGACGGCTACCTGCTGAACACCCCCGAGGCCAACG 11135 ||| || | ||| | ||| |||| ||| || ||||| ||||| |||||| |||| Sbjct 276 CGA-CGGCGACGCC---ATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACG 221 Query 11136 AGGCCGCCGCGCAGATCGCGCACGGCATCACCGGGCCGTCGGTCGATCTCGCGGACGCCG 11195 |||| |||| ||||||| ||||||| |||||||||| |||||| | | | | || Sbjct 220 AGGCTGCCGACCAGATCGAGCACGGCGTCACCGGGCCCAGTGTCGATTTGGGTGCGGTCG 161 Query 11196 AGTGGGAGCTGACCCGCGAGGACGGGACGGTGATCACC 11233 |||||| ||||| ||| || | |||| |||| || Sbjct 160 AGTGGG---TGACCGCCGACGA--GAACGGCGATCCCC 128 >seq539 Length=1209 Score = 96.9 bits (106), Expect = 1e-15 Identities = 208/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 11428 CGTCTACAAGGCCGAGTTCTTCGACGACCCGCAGCTCGACGGCCCGACGCTGCCAACGAT 11487 |||| ||||| || | | ||||| || || |||| || ||||| | || | | || Sbjct 1094 CGTCCACAAGACCCACATGTTCGAGGATCCTGGGCTCACCGCACCGACCCCGCTATCCAT 1035 Query 11488 GGGAGACGACGGCCGGATCTATGGGCATCTCGCGTGCTTCGGCCAGTGCCACCGCTCGGT 11547 | ||| ||||| ||| || || ||||| |||||||| ||||| | ||| Sbjct 1034 CGACTCCGAGGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCAT-GTGGGGT 976 Query 11548 CCA--GTCCGAGTGCATCATCGCCCCGCGGTCGGCGACGAACTACGCGCACTTCCACACG 11605 || | || ||||| | || || | || ||| |||||| ||||||||||| Sbjct 975 TCACCGACC-AGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACC 917 Query 11606 AGCCCGGCCGTCCGGCTCGATGACGGCCGCCGTCTGCCGGTCGGCCGCCTCACCGTCGGC 11665 ||| | || |||||| |||| |||||| || |||||| | |||||||| ||| Sbjct 916 GCCCCACCGGTGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGC 857 Query 11666 ACCGGGCACG-CGGGT-GACCGCGTCGGGCCGAATGCCGCCGCCGCGCACTACGACAACA 11723 |||||||| | ||||| || || | | || |||| ||||| || ||||||||||||| Sbjct 856 ACCGGGCATGCCGGGTCGAAAGCCCCCGCCC--ATGCTGCCGCAGCCCACTACGACAACA 799 Query 11724 CCGG 11727 |||| Sbjct 798 CCGG 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196009207725584