Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq132376 125 2e-23 >seq132376 Length=11941 Score = 125 bits (138), Expect = 2e-23 Identities = 281/417 (67%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 133904 TTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACTA 133963 || ||||| |||||| ||| ||| | || ||| || | ||||| ||| || ||| | Sbjct 730 TTAAAAAACAATCCTTTTTCACGAAGACACATTTTATCAGCATGAAATCCTGCAGAAATT 789 Query 133964 GATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAAG 134023 | || ||| | | |||||||||||| || | |||||| | ||| ||| | ||| Sbjct 790 AAAAATATGGCACTACCACCATGTCATACTTTAATTCAATTTTACGTTTCTGATGATAAA 849 Query 134024 ---TTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAAC 134080 ||||| ||| ||||||||||||| ||| | || |||||||| || || || Sbjct 850 AAATTATCTTGTCAATTATATCAACGTAGTGCAGATATTTTTTTAGGAGTTCCTTTTAAT 909 Query 134081 ATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTT-GG 134139 |||||||| ||| ||||| |||| |||||||||||| | ||| || || |||| || Sbjct 910 ATTGCTTCTTATGCATTATTAACAATAATGTTAGCACAAATATGT-GGCTATCAGTTAGG 968 Query 134140 TGAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAAGCAGTTCA 134199 || ||| | | || |||| ||| ||||||| ||||| | | | || | Sbjct 969 AGAATTTATTCACACTTTAGGTGATGCTCATATTTATAGTAATCATTTTTCACAAATTAA 1028 Query 134200 GGAACAACTTTCACGTGAACCTAAAGAATTACCAACTCTTTGGATTGATACTAGTATTAC 134259 |||||| | | |||| ||| |||||||| | | ||| ||| | |||||| Sbjct 1029 TGAACAATTAAGTAGAAAACCAAAATCATTACCAATTTTAGTTATTAATAAAAATATTAC 1088 Query 134260 TGA--TATTAAAGATTTCACAATGGAATCTTTTAAATTGGAAAATTATAATCCAGAT 134314 | | |||| | |||| | | | ||| ||||||||| ||| | ||| ||||| || Sbjct 1089 TAATTTATTTA--ATTTTAAATTTGAAGATTTTAAATTAGAACAATATGATCCATAT 1143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144583298584968