Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq20354 149 1e-30 seq1065 120 6e-22 seq199195 100 5e-16 >seq20354 Length=4240 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| || ||||||||| ||||| |||| ||| || ||||||| |||| || || Sbjct 1545 TCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCTTC 1486 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || | ||| || || || ||||||||||||||||| || ||||| |||||| Sbjct 1485 AGCCAGAAGATGGACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACGCG 1426 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 || | ||| || || | ||| || || ||||||| || ||||||||||| Sbjct 1425 ACGATGCGCTCGCCAAATGTGGCGCTCCGGTTGCCGATCCAGTTCAGTGCCCAGTCTGCT 1366 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||| |||| ||||| ||||||||||| | ||| Sbjct 1365 TTCCTCTTAATGCAGGGCATCGTCTCAACGGC 1334 Score = 93.3 bits (102), Expect = 8e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || || ||||||||||||||||||||||| ||||| || |||| ||| Sbjct 3238 CTGGTACTCCCCGACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAGGAAATGTGCTC 3179 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC 47932 ||||||| ||| ||||| | ||| |||||| Sbjct 3178 CATGAAGTCGAAAGGGTTCTCCGAGTTGTACACC 3145 >seq1065 Length=2691 Score = 120 bits (132), Expect = 6e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | || ||||||||||||||||||||| ||||||||| ||||||| ||| Sbjct 1075 GTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTGG 1016 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||||| |||| | ||||||||| |||||||| |||| || ||||||| ||| Sbjct 1015 TTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCCCGTCTCTATCTGC 956 Query 213648 GACACCAGTAT 213658 ||| |||| || Sbjct 955 GACTCCAGGAT 945 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 ||| ||||||||| ||| | ||| | ||| || | | ||||||||| |||||||| Sbjct 187 GGGGCACATGAGGGACCACATCTGGTCCTGCTCC-ACCCGCCGCATGAACAAGTCCGGGA 129 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||| || || ||| ||||||| | || |||| ||| || | || || || Sbjct 128 TCCAGAGGCCGTAGAAGAGGTCCCGCGCCCGATTCTCCTCCTTGCCTGTATTCTTCTTCA 69 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 | || || |||||||| | |||||| ||||||||||||| ||| || ||||| || || | Sbjct 68 GGTCCAGGAAGTCAAACACGTCCGCATGCCACGGCTCCAGGTACATCGCAAATGCTCCGG 9 Query 213958 GCCTCT 213963 |||||| Sbjct 8 GCCTCT 3 >seq199195 Length=2156 Score = 100 bits (110), Expect = 5e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 241480 GTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCG 241539 ||| || | ||||||| | | ||| || ||||| |||| || ||| || ||||| || || Sbjct 1288 GTTCTCGGTCTTGAGCGCGTGCACCTTGTCCTCGAGCCTCGAGATTCGCTCCAGCTTTCG 1229 Query 241540 CCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCG 241599 ||| || ||| |||| || | |||||||| || |||||||||||| |||||| | Sbjct 1228 TTTGCGACACTTGCTGGCGGCGATGCGGTTCCTCAGCCTCTTACGTTCCAGCTTGATCCT 1169 Query 241600 TTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||| ||||||||| || ||| Sbjct 1168 CTCCTGGTCGCGCATGTCGATGGGCGAC 1141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929151382973440