Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq20354 154 3e-32 seq1065 104 4e-17 >seq20354 Length=4240 Score = 154 bits (170), Expect = 3e-32 Identities = 178/237 (75%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||| || || || ||||| ||| | ||| || ||| |||| |||||||| || Sbjct 1312 CGACAGGGACCGTCTGTTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAAGCAGA 1371 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| |||| |||||| || || |||||| || ||||||||||| | || || || Sbjct 1372 CTGGGCACTGAACTGGATCGGCAACCGGAGCGCCACATTTGGCGAGCGCATCGTCGCGTT 1431 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||| || || ||||||||||| ||| || ||||||||| ||||||||||||| ||| | Sbjct 1432 TGCGGCCGTCGAGGGCATCTTCTTCTCGGGATCGTTTGCGTCCATCTTCTGGCTGAAGAA 1491 Query 25953 GAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | |||||| ||||||||| || ||| ||||||||||||||| | ||||||| Sbjct 1492 G-CGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 1547 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| |||| || |||||||||||||| ||||||||||| ||| Sbjct 3161 AACCCTTTCGACTTCATGGAGCACATTTCCTTGGAAGGGAAGACAAACTTCTTTGAGAAG 3220 Query 26305 AGGGTCGGCGACTATCA 26321 |||||||| || || || Sbjct 3221 AGGGTCGGGGAGTACCA 3237 >seq1065 Length=2691 Score = 104 bits (114), Expect = 4e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000 ||| |||||| | ||||| | || ||||| |||| | |||||| || ||| | ||| Sbjct 244 GGTGTAGAGCCTCTCAAATTCCTCTCCGTAGACCTCTTGCAGGCCGGGGCACTCGTGGGG 185 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 ||||| || ||| || || | | |||| | ||||||| | |||||||||||| Sbjct 184 GCACATGAGGGACCACATCTGGTCCTGCTCCACCCGCCGCATGAACAAGTCCGGGATCCA 125 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 || | | ||||| || | | ||| | ||||||| ||| | || ||| |||| || Sbjct 124 GAGGCCGTAGAAGAGGTCCCGCGCCCGATTCTCCTCCTTGCCTGTATTCTTCTTCAGGTC 65 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 || || ||||| | ||| || |||||||||||||| || | || | || ||||| Sbjct 64 CAGGAAGTCAAACACGTCCGCATGCCACGGCTCCAGGTACATCGCAAATGCTCCGGG 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926470254711040