Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq17329 113 6e-20 >seq17329 Length=11852 Score = 113 bits (124), Expect = 6e-20 Identities = 167/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 173248 CAGGTGTTTTACCAGTAATGAAAATCCTTGAAGATGCTTTTTCATATGCTAATCAATTAG 173307 |||| ||| | || || |||||||| ||||||||| | |||||||||||||||||| ||| Sbjct 10298 CAGGGGTTATCCCGGTTATGAAAATTCTTGAAGATTCATTTTCATATGCTAATCAACTAG 10239 Query 173308 GACAACGTCCAGGTGCTGGAGCTGCTTATATCAATATCTTCCATTCAGATGTTGAAGAAT 173367 | ||| | | ||||||||| || | |||| | ||| | ||| ||||| || || Sbjct 10238 GTCAAAGACAAGGTGCTGGGGCAGTTTATTTAAATGTTCATCATCCAGATATTATGTTAT 10179 Query 173368 TTCTAGATTCTAA----GAAAATCAACGCTGACGAAAAATCACGTCTTAAATCGCTTTCG 173423 || ||||||| || |||||| || || |||||| ||| ||||||| | || Sbjct 10178 TTTTAGATTCAAAGCGTGAAAAT----GCAGATGAAAAAATTCGTATTAAATCAATGTCT 10123 Query 173424 TTAGGTGTTATCGTTCCTGACA--AATTCATGGAATTAGCTGAGAAGGATGAAC 173475 ||||| || | ||||||| | | || | |||||||| | || |||||| Sbjct 10122 TTAGGAGTAGTTATTCCTGATATTACTT--TTGAATTAGCAAAAAATAATGAAC 10071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700068123867520