Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq71940 719 0.0 seq117463 354 4e-93 >seq71940 Length=2400 Score = 719 bits (796), Expect = 0.0 Identities = 728/944 (77%), Gaps = 3/944 (0%) Strand=Plus/Plus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 ||||||||||||||||||||| | || | ||| |||||||||| | || ||||| Sbjct 407 GCCATCAACTGGAACCGCGTCGTCGATCCGATCGATGATGAGGTCTGGGATCGCCTGACC 466 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 ||||||||||||||| |||||| | || | ||| ||||||| | | |||| || Sbjct 467 GGCAACTTCTGGCTGCCGGAGAAGGTTCCGCTGAGCAATGACATCCAGTCGTGGGCGACT 526 Query 59386 CTGACGGAGGAAGAGCAAGTC-CTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGA 59444 ||||| || || ||| ||| | || |||||||| ||||||||||| ||||| ||||||| Sbjct 527 CTGACCGACGATGAG-AAGACACTGACGATGCGCGTCTTCACCGGTCTGACCCTGCTCGA 585 Query 59445 CACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGA 59504 |||||||||||||||||| ||||| | || ||||| || ||| | || |||||||| Sbjct 586 CACGATCCAGGGCACCGTCGGTGCGATCTCGCTCATCCCGGATGCGGTGACCCCGCACGA 645 Query 59505 GGAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAA 59564 ||||| ||| ||||||||||||||||||||| |||||||||||| ||| | Sbjct 646 AGAGGCAGTGCTGACGAACATCGCGTTCATGGAGAGCGTGCACGCGAAGTCGTACTCCTC 705 Query 59565 CATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGA 59624 ||||||||||| ||||||||| | ||||||||||||| ||| |||||||||||| || Sbjct 706 GATCTTCTCGACCCTGTGCTCGACGAAGGAGATCGACGAGGCATTCCGCTGGTCGCGTGA 765 Query 59625 GAATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCC 59684 ||| | ||||||| |||||| | ||| |||| |||||||| ||| |||||||| Sbjct 766 GAACACCTACCTGCAGTCCAAGGCCGATATCATCCTCAGCTACTACCGGGGCGACGATCC 825 Query 59685 GCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTA 59744 ||| ||||| ||||| || |||||| |||| ||| |||||| |||||||| |||||||| Sbjct 826 GCTCAAGCGCAAGGTCGCTTCGACGCTGCTCGAGTCGTTCCTCTTCTACTCCGGCTTCTA 885 Query 59745 CCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGCT 59804 |||||| ||||||||||| | | || ||||||||||| || ||| | ||||| || Sbjct 886 CCTGCCCATGTACTGGTCGGCGCACGCCAAACTGACGAACACCGCTGACCTCATCCGTCT 945 Query 59805 CATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCCT 59864 ||||| || |||||||| |||||||||||||||||||| ||||||| ||| ||||| Sbjct 946 GATCATCCGCGACGAGGCTGTGCACGGCTACTACATCGGCTACAAGTATCAGAAGGGCCT 1005 Query 59865 GGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTACT 59924 |||| | ||| ||||| ||| ||||||| |||||||||||| || || | Sbjct 1006 GGAGTCGCAGTCCGAGGAGCGCAAGCAGGAGCTCAAGGACTACACGATGAACCTCCTCTT 1065 Query 59925 CGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTGAC 59984 |||| | ||||| |||||| | | ||||| || || | ||||| ||||| ||| | Sbjct 1066 CGAGCTCTACGAGAACGAGGTCGCCTACACCCACGACATCTACGATCCGGTGGGGCTGTC 1125 Query 59985 TGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGCTA 60044 ||||| |||||||||||| | ||||||||||||||||||||||||||| |||||||| Sbjct 1126 CGAGGACTGCAAGATGTTCCTCCACTACAACGCCAACAAGGCGCTGATGAACCTCGGCTA 1185 Query 60045 CGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTGTC 60104 ||| ||| ||||||| || | || |||||||| |||| ||| | ||||| ||||| Sbjct 1186 CGAAGCGATGTTCCCCAAGGAGGTCACGAAGGTGAATCCGGCCATCCTTGCGGCTCTGTC 1245 Query 60105 CCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATTGG 60164 || ||| | || |||||||||||||||||||| || || || | || || || || Sbjct 1246 ACCCGGCAGCGATGAGAACCACGACTTCTTCTCCGGTTCGGGATCGTCCTACGTCATCGG 1305 Query 60165 CAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT-AGTCC 60207 |||||| ||| || |||||||| || |||||||||| ||||| Sbjct 1306 CAAGGCAGAGAACACAGAAGACGACGACTGGGACTTCTGAGTCC 1349 >seq117463 Length=1413 Score = 354 bits (392), Expect = 4e-93 Identities = 654/944 (69%), Gaps = 20/944 (2%) Strand=Plus/Plus Query 59269 ATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACCAAC 59328 ||||| |||||||||||| ||||| || || || ||||| ||||||||| | ||| Sbjct 343 ATCAATTGGAACCGCGTCGGCGACGAGAAAGACCTCGAGGTATGGAACCGGCTCACCGCG 402 Query 59329 AACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACGCTG 59388 ||||||||||| || |||||| | || | |||||||||||||| |||||| | ||| Sbjct 403 AACTTCTGGCTACCCGAGAAGGTGCCACTGTCCAACGACATCCCCGCCTGGCAGAGGCTC 462 Query 59389 ACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGACACG 59448 || ||| | || | | ||||| ||||| ||||||||||| ||||||||||| |||||| Sbjct 463 ACCGAGAAGGAACGAACTCTCACTATGCGTGTCTTCACCGGGCTGACGATGCTTGACACG 522 Query 59449 ATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCG--CACGAGG 59506 | || | ||| || || | | | | ||||| || || || | ||| ||||| | Sbjct 523 GTGCAAGCCACAGTCGGGGAGATCTGTCAGATCCAGGATGC--TCGCACCGAACACGAAG 580 Query 59507 AGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAACA 59566 |||| || ||||| ||||||||||||||| ||||||||||||| | |||| Sbjct 581 AGGCCGTCTACACCAACATCGCGTTCATGCAGTCGGTGCACGCCCGGTCCTACTCTTCGG 640 Query 59567 TCTTCTCGACGCT---GTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGG 59623 | ||||| || || | || | ||| ||||||||||| || | || ||| | | Sbjct 641 TGTTCTCCACCCTGACGAGCAC-TCC--GGAGATCGACGACGCCTACCAGTGGGCCGTAA 697 Query 59624 AGAATCCGAACCTGCAAC-GCAAGGCT--CAGATCGTCCTGGACTACTACCAGGGTGACG 59680 | || || |||||| | ||| | | | | || ||| | ||||| | || ||| Sbjct 698 ACAA--CG-ACCTGCTTCAGCAGCGGTGCAAAAAGGTACTGAAACACTACTACGGCAACG 754 Query 59681 ATCCGCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCT 59740 | ||||| || |||||||| |||| || ||||| | | ||| ||||| | || | Sbjct 755 ACCCGCTCAAACGGAAGGTCTCCTCTACTCTGCTGTCCTCGCTGCTGCTCTACGCAGGGT 814 Query 59741 TCTACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCC 59800 |||||||||| || | | || | | | ||||| ||||| || |||||||||| Sbjct 815 TCTACCTGCCATTGCATTTCTCCGTGCACGCCACACTGACCAACACCGCAGACATGATCC 874 Query 59801 GGCTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCG 59860 | |||||| | || || |||| ||||||||||||||| ||| ||||| | ||||| | Sbjct 875 GCCTCATCCTGCGGGATAAGGCCGTGCACGGCTACTACTCCGGCTACAAATATCAGCGAG 934 Query 59861 GCCTGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGC 59920 || | |||| |||| | || | | ||| || | || | ||| |||| |||| Sbjct 935 GCATCGAGAATCAGGCATCTGAACGGCAGAACGAGATGCACGAGTTCACCTACGAGCTGC 994 Query 59921 TACTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGA-CGGCGTGGGA 59979 | || | ||||| ||| | | ||| | || |||||||| | || |||| Sbjct 995 TTGAAGACCTCTACGAGCTAGAGCTCGCCTACTCAGGTGAACTGTACGAGCCGC-TGGGG 1053 Query 59980 CTGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTC 60039 |||| || || || ||||| | ||||||||||| |||||||| |||||||| ||| Sbjct 1054 CTGATGGACGACGTGGCAGTGTTCGTACGCTACAACGCGAACAAGGCACTGATGAACCTC 1113 Query 60040 GGCTACGAGGCGCTGTTCCCGCGC-GACGAAACCGAGGTGAATGCGGCGATCTTGGCGGC 60098 |||||| || | ||| | || | | || ||||| || ||| ||| ||| | || || Sbjct 1114 GGCTACCCTGCAC-GTTTCAGCCCGGGAGAGACCGAAGTCAATCCGGAAATCCTCGCCGC 1172 Query 60099 ACTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGT 60158 |||| | || || | || |||||||||||||||||||| || || || | | || || Sbjct 1173 ACTGGCACCAGGTGCTGATGAGAACCACGACTTCTTCTCCGGGTCCGGTTCCTCCTACGT 1232 Query 60159 GATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202 || ||||||| || | || |||| || |||||||||| Sbjct 1233 CATCGGCAAGGGCGAAGACACCAGCGACGCCGACTGGGACTTCT 1276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258285803950416