Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq173627 143 8e-29 seq53522 129 2e-24 seq1065 100 8e-16 >seq173627 Length=4584 Score = 143 bits (158), Expect = 8e-29 Identities = 235/336 (70%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| | || || ||||||||||| ||||| ||||| | ||| |||| | ||| | | || Sbjct 3676 TTTTCTTCCTACTGCATCAATTTCATCAATAAAAATAATACAAGGAGCACTTTTTTTAGC 3617 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | | | ||| | |||||| | | || ||||||| |||||| | | |||| ||||||| Sbjct 3616 AGTAGTAAACATTTCTCTAATTCTTGAAGCTCCAACTCCAACAAAAACTTCTTCAAATTC 3557 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 |||| | || | | || ||| | ||| |||||| || || ||||| | || | | Sbjct 3556 AGAACCAGAAATTGAAAAGAAAGGAACACCTGCTTCACCAGCAACTGCTTTTGCTAATAA 3497 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAG 289261 |||||||| || ||||| ||||| | | |||||||| ||||| ||| |||| |||| Sbjct 3496 AGTCTTACCAGTACCAGGCGGTCCTACAAGAAGAACTCCTTTTGGCACTCTTGCACCCAT 3437 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 | |||||| | || ||||||||| | |||| ||| || | ||| ||||| Sbjct 3436 TTG-TGCATATTTTTGTGGAAACTTTAAAAAATGAACAACTTCTTCTAATTCCAATTTTT 3378 Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGTAATAT 289357 | || | | || || ||||||| ||| || ||| Sbjct 3377 CTTCTTTAATACCAGCAACATCAGTAAATCTAGTAT 3342 >seq53522 Length=4295 Score = 129 bits (142), Expect = 2e-24 Identities = 343/515 (67%), Gaps = 22/515 (4%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||||||||| | ||| |||||| | || | | ||| | | |||||| ||||| Sbjct 1940 ATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGACGGTTTGTAGCTGC 1881 Query 288912 CAATACAACAATAGATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAA 288970 | | |||| ||| ||||||| |||||| ||||| ||| ||||| || | Sbjct 1880 AATGATCACAACTCCCTCG-TTTGCTTCAAATCCGTCCATTTCGACTAACATTTGGTTTA 1822 Query 288971 GTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt-- 289028 ||||| || | ||||||||| || | | ||| | || | | | | | Sbjct 1821 AGGTTTGCTCACGTTCATCATTG---CCGC------CGCCCATACCGATACCTCTATGGC 1771 Query 289029 -ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||| || ||||||||||| || || || || | ||| |||| ||| || | | | Sbjct 1770 GACCTACCGCATCAATTTCATCGATAAAGATAATACAAGGAGCATTACGTTTACCCTGTT 1711 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| | | | |||||| ||| || | ||| ||| ||||||| ||||| ||||| Sbjct 1710 CAAACATGTTACGCACACGGCTTGCACCGACACCTACAAACATTTCAACAAAATCAGAGC 1651 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||||| | || || | ||||| || || ||||| | ||| | || |||||||||| Sbjct 1650 CGGATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCTTTAGCAAGAAGTGTCT 1591 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGAC 289266 |||| |||||||| || ||| ||| | | ||||| |||| ||| | ||| || Sbjct 1590 TACCGGTTCCAGGAGG-ACCTATAAGTAAGCAGCCTTTCGGTATTTTACCGCCA--AGTT 1534 Query 289267 TT---ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || | || || | ||| ||||||| ||||| ||||| | ||| | |||||| Sbjct 1533 TTTGGAACTTGCTTGGATCTC-TTAAAAAATCTACTATTTCAGTTAATTCTTCTTTTGCT 1475 Query 289324 TCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 ||||| ||||||||||| ||| ||||| || Sbjct 1474 TCATCGATACCTGCTACATCTTTAAAGGTAATTTT 1440 >seq1065 Length=2691 Score = 100 bits (110), Expect = 8e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || || | ||| ||||||||| | |||||||||||| | |||||||||| Sbjct 1074 TGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTGGT 1015 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 | || || ||||| || ||||||||||| || ||||| ||||| || ||||| ||||| | Sbjct 1014 TGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCCCGTCTCTATCTGCG 955 Query 155749 CGTCCAGAAT 155758 ||||| || Sbjct 954 ACTCCAGGAT 945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467960906193892