Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq144998 156 1e-33 >seq144998 Length=1356 Score = 156 bits (172), Expect = 1e-33 Identities = 247/353 (70%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 39006 ACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTACGTGGCCATC 39065 |||||||| ||||| || | ||| | ||| || |||| |||||| | || | | Sbjct 350 ACGTCGGGAGGCAGCACGGTGATGCCGAGGCGACGACACTCGTTGAGGTAGATCGCGAGC 291 Query 39066 TTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGC 39125 |||| ||||| ||| || |||||||||||| ||||||||||| ||||||| |||||| Sbjct 290 TTGTCCTTGTTGTCACCGACCGAGGTGAGCAGGGCCGCCATGTATTCGGCCGTGTAGTGG 231 Query 39126 GTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTG 39185 | ||| | | || || | ||| | | || ||||| || |||||||| || |||||| Sbjct 230 GCCTTGAGGAAGGCGGTCCAGTAGGACACGACGCCGTATGCGGCCGAGTGTGCTTTGTTG 171 Query 39186 AAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAG 39245 ||||||||| | | ||| || | ||| | |||||||| || ||| || | || || Sbjct 170 AAGGCGTAGTCGGAGAACGGCAGCAGGATGTCCCACAGGGCTTGGGCCGCGGCCTCGGAA 111 Query 39246 TAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG-- 39303 ||||| || || | ||| | |||| || || |||| | || ||||| Sbjct 110 TAGCCGCGGTCCTTCATTCCGCTGAAGAAGCCGACCTGCTGCTTGTCGAG---CTCGGAT 54 Query 39304 -GCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTA 39355 |||||||||||||||||| || || || | |||||||| || || | ||| Sbjct 53 TTCTTCTTCTTGCCCATCGCGCGACGGAGGATATCGGCCTGGCCGAGCGAGTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162928144899288