Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11283 210 3e-48 seq20354 152 6e-31 seq133391 136 5e-26 seq116809 129 7e-24 seq137924 120 4e-21 seq31908 120 4e-21 seq1065 105 8e-17 seq155366 91.5 2e-12 seq59107 91.5 2e-12 seq86365 89.7 6e-12 seq27636 89.7 6e-12 >seq11283 Length=1855 Score = 210 bits (232), Expect = 3e-48 Identities = 423/621 (68%), Gaps = 11/621 (2%) Strand=Plus/Minus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGC 1852099 ||| ||||||||||| | |||| | |||||||||||| | | | || || || Sbjct 1563 AGGTCGATCTTGGAGTCTTCCTCAGATGAGCTCATCTTGCCAC---CAGACAGCCCAGGA 1507 Query 1852100 ACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGC 1852159 || | ||||| | ||||||| ||||||| |||||| || |||||||| | | | Sbjct 1506 ACCATAGGGTTCATGAGGTGGATGCGCTTCTCATAGCCCAGCTGCGGCAGGTACTT-CTC 1448 Query 1852160 GCA-AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218 | | || | || ||||| ||||||||| ||||| |||||||||||||||| |||| Sbjct 1447 GGAGAACGTGAAGATCTTCCGCTGGTCGACGCCGCCGAACTGGGCGTCGACGTGAAGGTA 1388 Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTC 1852278 | ||||| | ||| || | | ||||||||||| | |||| |||||||||| | | Sbjct 1387 TTCTTCGTCCAAGGCTTGGAGGCACGGGTAGAGCATGCTGCTAAGGAGCGGGTGATCGAC 1328 Query 1852279 CATCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGC-CGGTGCGCACGTGCGCCGC 1852335 ||||||||||| || |||||| || ||| ||||| ||||| || | | | | Sbjct 1327 TTGCTTGACCACCTCGGCACCGGCCTTCTTGGCGTCGTGCTCGGTGACCATG---GACAC 1271 Query 1852336 GAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAA 1852395 ||||||||| | ||| || | | | | | ||| ||| || || || || || Sbjct 1270 GAGTCGGTACACGTCTAGAGAGAACTCACGGCCCAGCTGATAGCTGGATCCTTTTACGAA 1211 Query 1852396 CTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTA 1852455 |||| ||| ||||||||||||| | ||||||||| |||||| | |||||| Sbjct 1210 GCGGAGTTTCTCCAACGGCACGCCGATGGACGTGAGCATGGCTTTGATGACGTGCTCGTA 1151 Query 1852456 CCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTG 1852515 | | || || | ||||||||| |||| ||| ||| || | || ||||| Sbjct 1150 GTATTGTACTCGCAACTCCAGCAGGTCCCAAGGCGCCTTCATGTTATCCAAGTACGCGTG 1091 Query 1852516 CACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAA 1852575 || ||| ||||| |||||| | ||| || || |||| ||||| || || | ||| | Sbjct 1090 CAAGTCAGCAAACAGGATCGTTACCTCGCATCCAGCCTTCAGAAAATCTGCGATCTTGGA 1031 Query 1852576 GATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGAT 1852635 ||||| || |||||| | | || || || || || | ||||| ||||| || || | Sbjct 1030 CATGGGGACGAAGTAGGCGACATGTGGTTTTCCGGTGGTGGCCGTCCCCCAGTAGATCTT 971 Query 1852636 CAGGGGGCGCTCGGCCATGAT 1852656 ||| ||||| |||||| Sbjct 970 GAGGTCTCGCTCCTTCATGAT 950 >seq20354 Length=4240 Score = 152 bits (168), Expect = 6e-31 Identities = 180/240 (75%), Gaps = 9/240 (4%) Strand=Plus/Minus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| |||||||| | |||||||| |||| ||||||||||||||| || |||||||| Sbjct 1545 TCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCTTC 1486 Query 869243 AGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCC 869301 ||||| ||||||| |||| || |||||||| ||||||||||||||||| ||||| | Sbjct 1485 AGCCAGAAGATGGACGCA-AACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACGC 1427 Query 869302 GATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCC--TTGTTGATCCACTTCATCGCCCAG 869359 || || |||||| |||| || ||| |||| ||| |||||| |||| |||||| Sbjct 1426 GACGATGCGCTCGCCAAATGT-----GGCGCTCCGGTTGCCGATCCAGTTCAGTGCCCAG 1372 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 || || || || | | | |||| ||| || | |||| || || ||||| | ||| Sbjct 1371 TCTGCTTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAACAGACGGTCCCTGTCG 1312 Score = 113 bits (124), Expect = 5e-19 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 868789 CTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACAT 868848 ||||||||| || ||| | | ||||| ||||||||||||||||||||||| | ||| Sbjct 2279 CTTTTCGCAGCCAAGCTCCACAAGCAGACGGTCGGCGACAAACTCGATGTAGCGCTTCAT 2220 Query 868849 GAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTC 868908 || || |||||||||||| || |||||||| || | ||| ||| ||||| | ||| Sbjct 2219 CAGCTCGCAGTTCATGCCGATCAGGGCCACCGGAAGAGCATCGGTCAGGAACTCCTGCTC 2160 Query 868909 GATCTCGACGGCCTCGACGATGATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGA 868967 || |||| || ||| ||||||||| | | |||| || || |||||||| || | Sbjct 2159 AATGACGACAGCGTCGCAGATGATCTGTC-GCACACGCTCTTGAGATGGCTTGTTCACAA 2101 Query 868968 GCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCA 869003 | || | | || ||||| |||||| ||||| Sbjct 2100 GATGACTGAACATGAGACAGGCGAAGTCGGTGTGCA 2065 >seq133391 Length=2029 Score = 136 bits (150), Expect = 5e-26 Identities = 278/413 (67%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 1573779 CCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCACGCC 1573838 || ||| |||||||||| || || | || |||| || || |||||||| | || Sbjct 320 CCCTGGGTCGAAAAGTACCGTCCGGCGAAATTCAACGAGATCGTGGGCAACGAAGAGACC 379 Query 1573839 GTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCTCTTGCTGGCGGGT 1573898 | ||| ||| || | | | ||| ||| || | || ||| || | || |||| Sbjct 380 ATAGCCCGACTCGAAGTGTTTTCCCGCGAGGGCAACGTCCCGAACGTCATCCTTTCGGGC 439 Query 1573899 CCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCG 1573958 || ||||| |||||| ||||| | |||| ||| ||| || | | || | ||| | Sbjct 440 CCTCCCGGAGTGGGCAAAACCACCACCATCCTGTGCCTGTCGAGGATTCTTCTCGGCCCT 499 Query 1573959 GCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTG 1574018 | | ||| ||||| |||||||||||||| ||| |||| | ||| |||||||||| Sbjct 500 TCGTTCCGCGACGCCGTCCTCGAACTCAACGCCTCGAACGACAGAGGCATCGACGTCGTT 559 Query 1574019 CGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAG 1574078 ||||| | |||||| ||| || | | | || || || || |||||| Sbjct 560 CGCAACAAAATCAAGATGTTCGCGCAGAAAAAGGTAACTCTTCCACCGGGCAAACACAAG 619 Query 1574079 GTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCC 1574138 || |||||||||||||| || ||| || | || | || || ||||| ||||| Sbjct 620 GTCATCATCCTCGACGAAGCGGACAGCATGACAGAAGGAGCACAACAGGCTCTGCGCCGT 679 Query 1574139 ACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTC 1574191 || ||||||| || | || |||||| | || |||||||| ||||||||||| Sbjct 680 ACTATGGAAATCTACTCAAAGACGACGAGGTTCGCCCTGGCCTGCAACACGTC 732 >seq116809 Length=7987 Score = 129 bits (142), Expect = 7e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || ||| | || || ||||||||||||| ||| || || || Sbjct 5541 GCTTGGCAAGTTCACCTGGCAGCAGCAAACGAACGGCGGTCTGGACCTCCCGGCTGGTGA 5482 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| |||||||| ||||||| |||| | |||| | Sbjct 5481 TGGTGGAACGCTTGTTGTAGTGGGCCAGACGCGACGCCTCGGCTGCGATCCTCTCGAAGA 5422 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||| ||||| | ||| |||||| ||| ||| || | Sbjct 5421 TGTCGTTGACAAAGCTGTTCATGATGGACATGGCTTTGCTGGAGACGCCGGTGTCCGGAT 5362 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| || |||||||||||| Sbjct 5361 GCACTTGCTTCAGGACCTTGTAGATG 5336 >seq137924 Length=19151 Score = 120 bits (132), Expect = 4e-21 Identities = 150/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| || ||| | || | ||| || ||||||||||| || | ||| || Sbjct 14455 GCCAGTTCACCCGGCAGCAGGAGCCTCACAGCTGTCTGGATCTCCCGACTCGTGATGGTC 14396 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1254466 ||||||||| |||| ||||| || | | |||| ||| |||||| |||| ||||| Sbjct 14395 GAGCGCTTGTTGTAGTGAGCCAGCCGAGGACGACTCGCTGC-GATGCGCTCGAAGATGTC 14337 Query 1254467 GTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 ||| || || |||||||| |||||| | |||| |||| | || ||||||||| || Sbjct 14336 GTTCACGAAGCTGTTCATGATCGACATGGCCTTGCTGGACACTCCG--GTCGGGGTGGAC 14279 Query 1254527 CTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||||||||||||| Sbjct 14278 CTGTTTGAGCACCTTGTAGATG 14257 >seq31908 Length=9191 Score = 120 bits (132), Expect = 4e-21 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| || ||| | || | ||| || ||||||||||| || | ||| || Sbjct 1176 GCCAGTTCACCCGGCAGCAGGAGCCTCACAGCTGTCTGGATCTCCCGACTCGTGATGGTC 1117 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||| ||| | ||| | ||||||| |||| |||||| Sbjct 1116 GAGCGCTTGTTGTAGTGAGCCAGCCGGGACGACTCTGCTGCGATGCGCTCGAAGATGTCG 1057 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || || |||||||| |||||| | |||| |||| | || |||||||| ||| Sbjct 1056 TTCACGAAGCTGTTCATGATCGACATGGCCTTGCTGGACACTCCGGTATCGGGGTGGACC 997 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || |||||||||||||||||| Sbjct 996 TGTTTGAGCACCTTGTAGATG 976 >seq1065 Length=2691 Score = 105 bits (116), Expect = 8e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1628362 TCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGAC 1628421 ||||| || | |||||| ||| ||||||||||| |||| || || | ||| ||| Sbjct 231 TCAAATTCCTCTCCGTAGACCTCTTGCAGGCCGGGGCACTCGTGGGGGCACATGAGGGAC 172 Query 1628422 CAG-TCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAA 1628480 || || || | | || | || ||||| || | ||| |||| || |||| || Sbjct 171 CACATCTGGTCCTG-CTCCACCCGCCGCATGAACAAGTCCGGGATCCAGAGGCCGTAGAA 113 Query 1628481 GAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGAC 1628540 |||||| |||||||| |||||||||||||| ||||| || ||||| || |||| | Sbjct 112 GAGGTCCCGCGCCCGATTCTCCTCCTTGCCTGTATTCTTCTTCAGGTCCAGGAAGTCAAA 53 Query 1628541 AATGTCGGCGTGCCACGGCTCCAGGTA 1628567 | ||| || ||||||||||||||||| Sbjct 52 CACGTCCGCATGCCACGGCTCCAGGTA 26 Score = 93.3 bits (102), Expect = 5e-13 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| ||||| |||||||||||||||| || | | || || ||||||| |||||||| Sbjct 1071 ACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTGGTTGG 1012 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | |||| ||| ||||||| |||||||| || | ||| ||||| ||||||| | Sbjct 1011 ACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCCCGTCTCTATCTGCGACT 952 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCAC 1628315 | | |||||| |||| | ||| |||| |||| Sbjct 951 CCAGGATGGCGTACCACAGCTGCTGCGCCTGCAC 918 >seq155366 Length=2809 Score = 91.5 bits (100), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 1630183 CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCC 1630242 ||||| |||||||| ||||||||||||||||| ||||| || || ||||||||||| ||| Sbjct 2594 CCGATTCCGCCGGCAGACTTGGAGATGAGCGCACACTGCTTCAGGGTGTCGTAGATTCCC 2535 Query 1630243 TCGATCGAGTCGGCCTTCAT 1630262 || || |||| ||||||| Sbjct 2534 TCTATACTGTCGTCCTTCAT 2515 >seq59107 Length=3405 Score = 91.5 bits (100), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1254374 CACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACG 1254433 ||| || ||||||||||| || | || || ||||||||| |||| ||||| | Sbjct 2568 CACAGCCGTCTGGATCTCCCGGCTTGTAATGATGGAGCGCTTGTTGTAGTGAGCCAGGTG 2509 Query 1254434 GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACAT 1254493 | ||| | | ||| | |||| |||| ||| || || | |||||||| |||||| Sbjct 2508 GGACAACTCTGCTGCAATGAGCTCGAAGATGTTGTTCACGAAGGTGTTCATGATCGACAT 2449 Query 1254494 CGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||| |||| || || || |||||| ||||| ||||| |||||||||||| Sbjct 2448 GGCCTTGCTGGACATTCCGGTGTTGGGGTGGACCTGTTTGAGAACCTTGTAGATG 2394 >seq86365 Length=3188 Score = 89.7 bits (98), Expect = 6e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 1632623 CAGAACCGGCACAAGATCCTCGAGGCCGCCCACCCGTCGCCCAAGTCGGCCACCAGCGGC 1632682 ||||| |||||| | |||| || |||||||||||| ||| |||||| | || ||| Sbjct 586 CAGAAGCGGCACCTGGTCCTGCAGTGCGCCCACCCGTCTCCCCTGTCGGCATCGAGGGGC 645 Query 1632683 TTTTTCGGCTGCCGCCACTTTTCGCAGGCCAACG 1632716 |||||||||||||||||||| || ||||||||| Sbjct 646 TTTTTCGGCTGCCGCCACTTCTCCAAGGCCAACG 679 >seq27636 Length=5387 Score = 89.7 bits (98), Expect = 6e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| | ||| |||||||||| | ||||| ||||| ||||||||||| || ||| Sbjct 313 AGCGGCTGAAGAGCAAGGAGGGCCGCATCCGAGGCAACCTAATGGGCAAGCGTGTGGACT 372 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | |||| || | ||||||| || |||||| | | |||| |||||| ||||||| Sbjct 373 TCTCCGCCCGTACGGTCATCACGCCAGACCCCAATTTGCGCATTAGCGAGGTCGGCGTGC 432 Query 507225 CCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCCCCTTACCATGG 507281 || |||| | ||| |||||||| |||||| ||| || || | | ||||| Sbjct 433 CCCGCTCTATCGCCCAGAACCTCACCTTCCCCGAGATCGTCACCCCATTCAACATGG 489 Score = 89.7 bits (98), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 507737 TACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCG 507796 |||||||| |||||||| || ||||||||||||||||||||||| ||||| | | || Sbjct 2784 TACAACGCGGACTTTGATGGAGACGAGATGAACCTGCACGTGCCGCAGTCGCTGGAGACG 2843 Query 507797 CGCGCCGAGGTGACGCA---CACCATGAGCGTGTCGCTCAAGACCGTGTCGCCGCAGGCC 507853 || || |||||| ||| ||||| ||| | | ||| | | | |||||| | Sbjct 2844 CGGGCGGAGGTGGAGCAGCTGGCCATG---GTGCCTCGGCAGATCATCACTCCGCAGTCA 2900 Query 507854 AACAAGCCCATCATCGGCCTGGTCATGGACGCCCTC 507889 ||||||||| |||| ||| | || |||| ||||| Sbjct 2901 AACAAGCCCGTCATGGGCATCGTGCAGGACACCCTC 2936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6090355659291572