Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022052.1 Length=76050 Score E Sequences producing significant alignments: (Bits) Value seq5422 86.0 3e-12 >seq5422 Length=1306 Score = 86.0 bits (94), Expect = 3e-12 Identities = 222/343 (65%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 44782 GCAGAAGTTCAACTTCCGTGGCATTGACGCGGTGATGAACGCGGTTGGCCCGGCGCTGCG 44841 |||| |||| ||||| ||||| ||||| ||||||| | || ||||| || ||||| Sbjct 888 GCAGGGGTTCGTGTTCCGCGGCATCGACGCCACGATGAACACCGTCGGCCCCGCCCTGCG 829 Query 44842 CGAGCACGGCGTTACGGTCGTCCCCCGCGCGCT-TAGCGCAGAAGCGGAGCGTTACCAGA 44900 ||||||| || || ||||| ||| | | | | || | ||||| ||||||| Sbjct 828 AAAGCACGGTGTCGTCATCATCCCCGACGCCATGTCGATC-GACTCCGAGCGGTACCAGA 770 Query 44901 CCGCTAAGGGCGGTCAGATGTGTAACCGCACCGTGGAAATGGGCTTCCGGGTGTTCGGCC 44960 | ||||||||||| |||||| ||| |||||| | ||| ||| | || | ||||| Sbjct 769 CGGCTAAGGGCGGGCAGATGAAGAACGCCACCGTCCACATGCGCTACACCGTTTACGGCC 710 Query 44961 CGGCTGGCGACTACTTCGACG---GCACGGCNNNNNNNNNNNNNNNNNNNNNNNNNNACA 45017 ||| || ||| |||| || ||||| ||| Sbjct 709 CGGAGGGTGACAGCTTCACCGGATGCACG---TACGGGGAAGCAGCGGACGCTGGCGACA 653 Query 45018 AGTCGATGACTAAGGCTGAATCCGTCGCGCTTAGGACGTTCCTGCTGCAATCGCTGATGA 45077 || || | | |||||| | ||||||||| | |||||||||||||| |||| | Sbjct 652 AGGCGGTCAGTAAGGCGCAGTCCGTCGCGTACCGCACGTTCCTGCTGCAGGGACTGACGG 593 Query 45078 TCCCGACTGACGACCCGGACCCGGACGCTGAGTCGCATGAGCG 45120 | ||||| | || | ||||| ||||| || ||||| ||||| Sbjct 592 TGCCGACGCAGGAGCGCGACCCCGACGCGGACTCGCACGAGCG 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242628926838636