Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022061.1 Length=70838 Score E Sequences producing significant alignments: (Bits) Value seq539 138 5e-28 >seq539 Length=1209 Score = 138 bits (152), Expect = 5e-28 Identities = 321/468 (69%), Gaps = 27/468 (6%) Strand=Plus/Minus Query 8801 CTCACCGAGCCGACCGAG--ATCCAGATGGACCCCGAGACCGGGCGCATCTTCGGCCACC 8858 ||||||| |||||| | ||||| | ||| ||||| || |||||| ||| |||| Sbjct 1060 CTCACCGCACCGACCCCGCTATCCA--TCGACTCCGAG---GGCCGCATCAGCGGACACC 1006 Query 8859 TGGCCTGCTTTGGCAGCTGCCACCGGTCGCTCCAGGCTCAGTGCGTGATGGCTCCCAAGA 8918 | || ||||| || ||||| | | || | |||||||| ||| ||| | Sbjct 1005 TCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAGTGCGTTCAGGCACCCCACT 946 Query 8919 GCCCGTCGAACTACTCGCAGTTCCACACCAGCCCGAGCG-TGCGGCTGGACGACGGCACC 8977 || | | |||| | || ||||||||| |||| | || || ||| ||| |||| | Sbjct 945 CCCAGACCGGCTACGCCCACTTCCACACC-GCCCCACCGGTGATGCTCGACAACGGTGAC 887 Query 8978 CGGCTGGCCGTCGGTCGGCTCACCGTCGGCACCGGCCACGC--GGACGAGCGCCTGGGCG 9035 || || ||||||| |||||||||| |||||||| || || || ||| ||| || Sbjct 886 CGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGGTCGAAAGCCCCCGCC 827 Query 9036 GC-GCGGCGGCGATGAGCC-ACTACGACAACACCGGGACGTGCTTCGCCCTGGTCCGCGC 9093 || || || |||| |||||||||||||||| || ||||||||||| |||||||| Sbjct 826 CATGCTGCCGC----AGCCCACTACGACAACACCGGCACCTGCTTCGCCCTCGTCCGCGC 771 Query 9094 CTACGA-GACCCCCATCGGCATCGAGGTCTCGGGCGTGGCCGCGCCCTGGGCCACCGCCG 9152 | ||| ||| || ||||||| ||| |||||||||||||| ||||| ||| | | Sbjct 770 CGGCGAAGACGAACA-CGGCATCTGGGTGTCGGGCGTGGCCGC-ACCTGG--CACTGAC- 716 Query 9153 AGCAGA----TCGAGATGGGCCTGGCCGCGCCGCTGTCCGGTGACTGGCGCGACTTCGGT 9208 ||| | | || || || || || || ||||||| || ||||| | |||| Sbjct 715 AGCGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGATTGGCGGCAGATCGGC 656 Query 9209 CAGGGCCTGGACCTGATCGCCGCCCTGGCCGTCAACACGCCCGGTTTC 9256 | |||| || |||||||||| || || ||||| || |||||| Sbjct 655 GGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225992098396924