Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022063.1 Length=70115 Score E Sequences producing significant alignments: (Bits) Value seq133315 125 3e-24 seq70437 122 4e-23 >seq133315 Length=1321 Score = 125 bits (138), Expect = 3e-24 Identities = 453/707 (64%), Gaps = 19/707 (3%) Strand=Plus/Minus Query 16769 GAGGAGCAGGTCAGCATGACCACCTTCCCGCTCGTCAAGGGCACGCGGCTCCGCGCCACC 16828 |||||| || | | | || | || |||||| | | || |||| ||||||||||||| Sbjct 1037 GAGGAGAAG-TAATCGTGGCAACATTCCCGATGCTGAAAGGCATCAAGCTCCGCGCCACC 979 Query 16829 AAGGTCGACAGCTGCGGCAAGCCGATCGCTGGTGCCCGCAATCGTCTCGTCACCTCCGGC 16888 |||||| |||| ||||| || ||| || ||| |||| ||| |||| ||| Sbjct 978 AAGGTCAACAGTTGCGGGCTCCCCGTCGAGGGCGCCGGCAACTATCTGACCACCGACGGT 919 Query 16889 TTCGTGACTCTGGGCCTGACCGCAGTGATGCGTGAGGCGCAGGACTTGACGCAGGACAAC 16948 |||||| | | || || | ||| || ||| | || | |||||| ||| Sbjct 918 TTCGTGTCGTTCAAAATGTCCCCCAACATGAAGGACGCGAACGAGATCGAGCAGGAGAAC 859 Query 16949 GCCGAGGGCAAGGAGTGCGTGAGTGACCGCACCGCGCCCGAGCGTCGCTGGTACACGCCT 17008 || |||| ||| |||| | | ||||||||| |||||||||| |||||| | Sbjct 858 GCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTGGTACGACCTC 799 Query 17009 GCGCTCGAACTCTGCAACGTCAACCCCGGCCTGATCACCATGTTCACCGGCTGGGAGAAT 17068 | ||| | || ||| || ||| ||| |||||||||||| ||| || ||| || | Sbjct 798 GAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGCGTGGAAGCAG 739 Query 17069 CTGCTGGACGCCAACGATGAGGTTGTCGGCTTCCGCGACCAGAAGGAGATCGAGAGCGAC 17128 | ||| ||| | || ||||||||||||||||||||| |||| ||| Sbjct 738 GAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGTCGAATCGGAC 679 Query 17129 TACGGCATCGCCCTTGAGGTGTGGACCTCGGGCAAGTCGGAGGACGACTGCGGCGATATT 17188 ||||| | ||||| || | |||||| |||||| | || ||||| ||| | Sbjct 678 TACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTGCCCC------ 625 Query 17189 CCGACGACCGACGCCGCGCTGCTCGACAC---CACCTCTGGCCGCAAGTACGGGTACTTC 17245 | | |||| || || | ||| ||| ||| || ||| ||||| |||||| | Sbjct 624 ACCCCCACCGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATGGGTACCTG 565 Query 17246 CTGTTCGCCGGTACCGAGTGGACACTGGGCGACATCAACATCGGCGCGACCGTCGCGACG 17305 ||| || ||||||| || || |||||||| | | ||| |||||| | Sbjct 564 CTGACGTGGGGCACCGAGTTCACGCTCGGCGACATTGAGGTACAGGCGGACGTCGCCAAC 505 Query 17306 CTGACCCTGACGGGCCGGACCATCGCGATGCCGAACTGGGCGCGTGGCCCGTACAACGTG 17365 | ||||| ||||| | |||||| ||| | |||| |||||||||| || || Sbjct 504 TTCACCCTCTCGGGCATCAGCATCGCTGGCCCGCAGTGGGGTCGTGGCCCGTGGAATGTT 445 Query 17366 CAGGCC------GACGACACCGGGGCGGCGGTGCGCCTGCTCACCCCGACGTCCAAGAAG 17419 ||| ||||||| | |||| | || ||| |||| || || | | Sbjct 444 GTCGCCATCGATGACGACAAC---ACGGCTGGCCGTCTGATCACTCCTCCGGATGATGAC 388 Query 17420 GAACACCTCACCGTGTTCCGCACCCCGATCGCTCCGCCGGAGCCGAC 17466 | || ||| || |||||||||||||| ||||||||| |||| Sbjct 387 CAGCATTTCATTCTGCAGCGCACCCCGATCGCGCCGCCGGAGTCGAC 341 >seq70437 Length=1356 Score = 122 bits (134), Expect = 4e-23 Identities = 227/333 (68%), Gaps = 9/333 (3%) Strand=Plus/Minus Query 10020 CCGCACCTTCACCGACGCCGTGATTGCGCTGCTCGGCGTGTCGACCTCCGATGACCGGAT 10079 ||| || |||||||||||| | || || |||||| || ||| ||| | || || Sbjct 456 CCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCAT 397 Query 10080 GATCGCCACCGACGCCGAGCTGTCGTACCGGTCGTTCCCGCACCCGCTCATGTGGATGAA 10139 | |||| | ||| ||| | | | ||| ||||| | ||||| |||||| |||| Sbjct 396 GCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAA 337 Query 10140 GCAGACCGGCTCCGGCTACGGCGGGCACACCGAGGCCTTCACCGTCGGCGCGATCGAGTC 10199 ||||||||||| ||| ||| ||| || ||| ||| ||||||| ||||| | Sbjct 336 GCAGACCGGCTTCGGACACG------ACAACG---CCTACACGGTCGGCGTCATCGAAGC 286 Query 10200 GGCCCGTGTCGAGGGCGACAAGGTGTTCGGCTCCGGCTACCTGCTCAACACGCCCGAGGC 10259 || |||||||| |||||| | ||| ||||| || |||||||||||| |||||| Sbjct 285 CGCACGTGTCGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGC 226 Query 10260 CGATGAGGCGGCGGGCGAACTCGCGCACAAGGTCACCGCGCCGAGCGTCGACCTGGCGCA 10319 | ||||| || | | | ||| |||| ||||||| ||| || ||||| ||| Sbjct 225 GAACGAGGCTGCCGACCAGATCGAGCACGGCGTCACCGGGCCCAGTGTCGATTTGGGTGC 166 Query 10320 GACCGAGTGGAAGCTGACCAACGAGGACGGCGA 10352 | ||||||| | || ||||| ||||||| Sbjct 165 GGTCGAGTGGGTGACCGCCGACGAGAACGGCGA 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 223684265134576