Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022085.1 Length=76483 Score E Sequences producing significant alignments: (Bits) Value seq5422 122 4e-23 >seq5422 Length=1306 Score = 122 bits (134), Expect = 4e-23 Identities = 288/429 (67%), Gaps = 21/429 (5%) Strand=Plus/Minus Query 45190 CACTGTCTTTGAGGCGTGGTC-GCGC-GTCATGTCCGATGTGCAGGCCATCTCCAAGGAC 45247 ||| ||| || |||| | || |||| |||||| ||| || |||| |||| ||||| Sbjct 960 CACCGTCATTCAGGCAT--TCAGCGCAGTCATGGACGAGGTACAGGGCATCGCCAAGCGT 903 Query 45248 TCCCGCAACGAGCAGCAGAACTTCAACTTCCGCGGCATCGACGCCGTCATGAACGTGGTG 45307 |||||||| |||||| ||| |||||||||||||||||| |||||| || Sbjct 902 GACCGCAACGCCCAGCAGGGGTTCGTGTTCCGCGGCATCGACGCCACGATGAACACCGTC 843 Query 45308 GGACCGGCGCTGCGCGCGCACGGCGTCACGGTCATCCCGCGCGCCGTCGAGGAAC-ACTC 45366 || || || ||||| |||||| ||| ||||||| |||| | | || | |||| Sbjct 842 GGCCCCGCCCTGCGAAAGCACGGTGTCGTCATCATCCCCGACGCCAT-GTCGATCGACTC 784 Query 45367 GGAGCGCTACGAGACGCAGCCCCGCGGCAACCGCCCCGGCACCCCGATGATCAACCGCCT 45426 ||||| ||| ||||| || | | | |||| ||||| ||| | Sbjct 783 CGAGCGGTACCAGACG----------GCTAAGGGCG-GGCA----GATGAAGAACGCCAC 739 Query 45427 TGTCCGGGTGGAGTTCACCGTCTTCGGGCCTCGCGGCGACTGGTTCGCTGGCACTACCTA 45486 |||| || | |||||| | ||| || || ||| | ||| | || || || Sbjct 738 CGTCCACATGCGCTACACCGTTTACGGCCCGGAGGGTGACAGCTTCACCGGATGCACGTA 679 Query 45487 CGGTGAGGCCGCCGACTCGGGCGACAAGGCGATGTCCAAGGCTCACAGCGTGGCCTACCG 45546 ||| || || || ||| | |||||||||||| | ||||| || ||| || ||||| Sbjct 678 CGGGGAAGCAGCGGACGCTGGCGACAAGGCGGTCAGTAAGGCGCAGTCCGTCGCGTACCG 619 Query 45547 GACATTCCTGTTGCAGGCCCTGACCATCCCCACCGACGAGCCCGACCCCGACGAGGATGC 45606 || |||||| |||||| ||||| | || || | |||| ||||||||||| ||| | Sbjct 618 CACGTTCCTGCTGCAGGGACTGACGGTGCCGACGCAGGAGCGCGACCCCGACGCGGACTC 559 Query 45607 GCACGAGCG 45615 ||||||||| Sbjct 558 GCACGAGCG 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244011073176944