Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq116809 168 1e-35 seq133391 167 4e-35 seq11283 156 7e-32 seq20354 154 2e-31 seq137924 147 3e-29 seq31908 147 3e-29 seq1065 120 5e-21 seq27636 89.7 8e-12 seq155366 86.0 1e-10 >seq116809 Length=7987 Score = 168 bits (186), Expect = 1e-35 Identities = 182/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| |||||||| ||||| ||||| |||||| |||| ||||| || ||| Sbjct 5580 TGTACTTCGTGACCGCCTTGGTCCCCTCGGAGACTGCGTGCTTGGCAAGTTCACCTGGCA 5521 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||||||||||| ||| ||| || ||| ||| |||||||| | Sbjct 5520 GCAGCAAACGAACGGCGGTCTGGACCTCCCGGCTGGTGATGGTGGAACGCTTGTTGTAGT 5461 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||||| |||| | |||| |||||||||||||| ||||| Sbjct 5460 GGGCCAGACGCGACGCCTCGGCTGCGATCCTCTCGAAGATGTCGTTGACAAAGCTGTTCA 5401 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | |||| |||||| ||| ||| || ||||| ||||| || ||||||| Sbjct 5400 TGATGGACATGGCTTTGCTGGAGACGCCGGTGTCCGGATGCACTTGCTTCAGGACCTTGT 5341 Query 1485710 A 1485710 | Sbjct 5340 A 5340 >seq133391 Length=2029 Score = 167 bits (184), Expect = 4e-35 Identities = 307/450 (68%), Gaps = 0/450 (0%) Strand=Plus/Plus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCC 2018975 || ||| ||||||||||||| ||| | || |||| |||||||||||||| | || Sbjct 320 CCCTGGGTCGAAAAGTACCGTCCGGCGAAATTCAACGAGATCGTGGGCAACGAAGAGACC 379 Query 2018976 GTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGC 2019035 | ||| ||| | | | | || ||| |||||| | || ||| || | || ||||| Sbjct 380 ATAGCCCGACTCGAAGTGTTTTCCCGCGAGGGCAACGTCCCGAACGTCATCCTTTCGGGC 439 Query 2019036 CCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCG 2019095 || ||||| |||||| ||||| | |||| ||||||| || | | || | ||| | Sbjct 440 CCTCCCGGAGTGGGCAAAACCACCACCATCCTGTGCCTGTCGAGGATTCTTCTCGGCCCT 499 Query 2019096 GCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTG 2019155 | | ||| ||||| ||||||||||| || || |||| | ||| | |||||||| Sbjct 500 TCGTTCCGCGACGCCGTCCTCGAACTCAACGCCTCGAACGACAGAGGCATCGACGTCGTT 559 Query 2019156 CGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAG 2019215 || | | |||||| ||| ||||| | || || || ||| |||||| Sbjct 560 CGCAACAAAATCAAGATGTTCGCGCAGAAAAAGGTAACTCTTCCACCGGGCAAACACAAG 619 Query 2019216 GTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCG 2019275 || ||||||||||| || || ||| || | || | || || ||||| || || Sbjct 620 GTCATCATCCTCGACGAAGCGGACAGCATGACAGAAGGAGCACAACAGGCTCTGCGCCGT 679 Query 2019276 ACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATG 2019335 || ||||||| ||| | || |||||| |||| || ||||||||||||||||| | Sbjct 680 ACTATGGAAATCTACTCAAAGACGACGAGGTTCGCCCTGGCCTGCAACACGTCCGACAAA 739 Query 2019336 GTCATCGAAGCCCTCCAGAGCCGTTGCGCC 2019365 |||||||| | ||||| ||| |||||| Sbjct 740 ATCATCGAACCAATCCAGTCCCGGTGCGCC 769 >seq11283 Length=1855 Score = 156 bits (172), Expect = 7e-32 Identities = 398/599 (66%), Gaps = 15/599 (3%) Strand=Plus/Minus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 || || ||||||||| | |||| | |||||||||||| | | || || || Sbjct 1563 AGGTCGATCTTGGAGTCTTCCTCAGATGAGCTCATCTTGCCACCA---GACAGCCCAGGA 1507 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 |||| ||||| | |||||||||||||| ||||||||| |||||||| | | | Sbjct 1506 ACCATAGGGTTCATGAGGTGGATGCGCTTCTCATAGCCCAGCTGCGGCAGGTACTT-CTC 1448 Query 2411503 GCA-AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561 | | || | |||||||| ||||||||| ||||| |||||||||||||||| |||| Sbjct 1447 GGAGAACGTGAAGATCTTCCGCTGGTCGACGCCGCCGAACTGGGCGTCGACGTGAAGGTA 1388 Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTC 2411621 | ||||| | ||| || | | |||||||| | | |||| || |||||| | | Sbjct 1387 TTCTTCGTCCAAGGCTTGGAGGCACGGGTAGAGCATGCTGCTAAGGAGCGGGTGATCGAC 1328 Query 2411622 CATCTTGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGCCGACGGTCACGCGCGCCGTC 2411679 ||||||||||| ||| |||||| || ||| ||||| |||| || | | Sbjct 1327 TTGCTTGACCACCTCGGCACCGGCCTTCTTGGCGTCGTGC--TCGGTGACCATGGACACG 1270 Query 2411680 AGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTG---CCGCGCACA 2411736 || || | | ||| || | | | | ||| |||| || |||| || || Sbjct 1269 AGTCGGTACACGTCTAGAGAGAACTCACGGCCCAGCTG---ATAGCTGGATCCTTTTACG 1213 Query 2411737 AATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCG 2411796 || ||| |||| ||| ||||| ||| | ||||||||| |||||| | |||| Sbjct 1212 AAGCGGAGTTTCTCCAACGGCACGCCGATGGACGTGAGCATGGCTTTGATGACGTGCTCG 1153 Query 2411797 TACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCG 2411856 || | | || ||| | |||||||| |||| ||| || || | || ||| Sbjct 1152 TAGTATTGTACTCGCAACTCCAGCAGGTCCCAAGGCGCCTTCATGTTATCCAAGTACGCG 1093 Query 2411857 TGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTA 2411916 |||| ||| ||||| |||||| | ||| ||||| |||| ||||| || || | || Sbjct 1092 TGCAAGTCAGCAAACAGGATCGTTACCTCGCATCCAGCCTTCAGAAAATCTGCGATCTTG 1033 Query 2411917 AAGATGGGCACAAAGTAGCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 | ||||| || |||||| | | ||| || || || || | || || ||||| || || Sbjct 1032 GACATGGGGACGAAGTAGGCGACATGTGGTTTTCCGGTGGTGGCCGTCCCCCAGTAGAT 974 >seq20354 Length=4240 Score = 154 bits (170), Expect = 2e-31 Identities = 179/238 (75%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 794344 TCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTG 794403 ||||| |||||||| | |||||||| ||| ||||||||||||||| || |||||||| Sbjct 1545 TCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCTTC 1486 Query 794404 AGCCAAAAGATGGCACAGAAAC-TGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCC 794462 ||||| ||||||| || |||| |||||||| ||||||||||||||||| ||||| | Sbjct 1485 AGCCAGAAGATGG-ACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACGC 1427 Query 794463 GACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTC 794522 ||||| |||||| |||| ||| | || | ||| |||||| |||| ||||| || Sbjct 1426 GACGATGCGCTCGCCAAATGTGGC---GCTCCGGTTGCCGATCCAGTTCAGTGCCCAGTC 1370 Query 794523 TGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 ||| || || | | |||||| ||| || | |||| || || ||||| | ||| Sbjct 1369 TGCTTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAACAGACGGTCCCTGTCG 1312 Score = 86.0 bits (94), Expect = 1e-10 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 793997 CTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACAT 794056 ||| ||||| || ||| | ||||||| ||||||||||| || || ||||| | ||| Sbjct 2279 CTTTTCGCAGCCAAGCTCCACAAGCAGACGGTCGGCGACAAACTCGATGTAGCGCTTCAT 2220 Query 794057 GAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTC 794116 || || |||||||||||| || ||||| || || | ||| | | ||||| | ||| Sbjct 2219 CAGCTCGCAGTTCATGCCGATCAGGGCCACCGGAAGAGCATCGGTCAGGAACTCCTGCTC 2160 Query 794117 GATCTCGACGGCCTCGATGATGATCTG 794143 || |||| || ||| ||||||||| Sbjct 2159 AATGACGACAGCGTCGCAGATGATCTG 2133 >seq137924 Length=19151 Score = 147 bits (162), Expect = 3e-29 Identities = 180/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| | |||||||| || ||| Sbjct 14499 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACTGCATGCTTTGCCAGTTCACCCGGCA 14440 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||| || ||||||||||| || | ||| || ||||||||| | Sbjct 14439 GCAGGAGCCTCACAGCTGTCTGGATCTCCCGACTCGTGATGGTCGAGCGCTTGTTGTAGT 14380 Query 1485590 GCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| || | | |||| || ||||||| |||| |||||||| || || |||| Sbjct 14379 GAGCCAGCCGAGGACGACTCGCTG-CGATGCGCTCGAAGATGTCGTTCACGAAGCTGTTC 14321 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||||| | ||| |||| | | | ||||||||| ||||| |||||||||||| Sbjct 14320 ATGATCGACATGGCCTTGCTGGACA--CTCCGGTCGGGGTGGACCTGTTTGAGCACCTTG 14263 Query 1485709 TA 1485710 || Sbjct 14262 TA 14261 >seq31908 Length=9191 Score = 147 bits (162), Expect = 3e-29 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| | |||||||| || ||| Sbjct 1220 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACCGCATGCTTTGCCAGTTCACCCGGCA 1161 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||| || ||||||||||| || | ||| || ||||||||| | Sbjct 1160 GCAGGAGCCTCACAGCTGTCTGGATCTCCCGACTCGTGATGGTCGAGCGCTTGTTGTAGT 1101 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| | ||| | ||||||| |||| |||||||| || || ||||| Sbjct 1100 GAGCCAGCCGGGACGACTCTGCTGCGATGCGCTCGAAGATGTCGTTCACGAAGCTGTTCA 1041 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| | ||| |||| | || |||||||| ||||| ||||||||||||| Sbjct 1040 TGATCGACATGGCCTTGCTGGACACTCCGGTATCGGGGTGGACCTGTTTGAGCACCTTGT 981 Query 1485710 A 1485710 | Sbjct 980 A 980 >seq1065 Length=2691 Score = 120 bits (132), Expect = 5e-21 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 2071786 CCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAG-TCGCCGCC 2071844 |||| | ||| ||||||||||| |||| ||||| | ||| ||||| || || Sbjct 219 CCGTAGACCTCTTGCAGGCCGGGGCACTCGTGGGGGCACATGAGGGACCACATCTGGTCC 160 Query 2071845 AGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGC 2071904 | | |||| || ||||| |||| ||| |||| |||||||| ||||| || ||||| Sbjct 159 TG-CTCCACCCGCCGCATGAACAAGTCCGGGATCCAGAGGCCGTAGAAGAGGTCCCGCGC 101 Query 2071905 CCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTG 2071964 ||| |||||||||||||| ||||| |||||||| || |||| | | ||| || || Sbjct 100 CCGATTCTCCTCCTTGCCTGTATTCTTCTTCAGGTCCAGGAAGTCAAACACGTCCGCATG 41 Query 2071965 CCACGGCTCCAGGTA 2071979 ||||||||||||||| Sbjct 40 CCACGGCTCCAGGTA 26 Score = 100 bits (110), Expect = 4e-15 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| |||||||||||||||||||||| || | ||||||| ||||||| ||||||| Sbjct 1071 ACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCTGGTTGG 1012 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | |||| ||| ||||||| ||||||||| || | |||||||| ||||||| | Sbjct 1011 ACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCCCGTCTCTATCTGCGACT 952 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACC 2071728 | |||||| |||| | || |||| ||||| Sbjct 951 CCAGGATGGCGTACCACAGCTGCTGCGCCTGCACC 917 >seq27636 Length=5387 Score = 89.7 bits (98), Expect = 8e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| | ||| ||||||||||||| ||||| ||||| ||||||||||| || ||| Sbjct 313 AGCGGCTGAAGAGCAAGGAGGGCCGCATCCGAGGCAACCTAATGGGCAAGCGTGTGGACT 372 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGC 429180 | | || || | ||||||| || |||||| | | |||| |||||| ||||||| Sbjct 373 TCTCCGCCCGTACGGTCATCACGCCAGACCCCAATTTGCGCATTAGCGAGGTCGGCGTGC 432 Query 429181 CCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCCCTTTGCCATGG 429237 || |||| | ||| |||||||| |||||| ||| || || || ||||| Sbjct 433 CCCGCTCTATCGCCCAGAACCTCACCTTCCCCGAGATCGTCACCCCATTCAACATGG 489 >seq155366 Length=2809 Score = 86.0 bits (94), Expect = 1e-10 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 ||||| |||||||| | ||||||||||||||| |||| ||||| || |||||||| ||| Sbjct 2594 CCGATTCCGCCGGCAGACTTGGAGATGAGCGCACACTGCTTCAGGGTGTCGTAGATTCCC 2535 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 || || |||| ||||||| | | ||| ||||| Sbjct 2534 TCTATACTGTCGTCCTTCATTTGGAGCAGGAAGCA 2500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7894491100282524