Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022328.1 Length=70236 Score E Sequences producing significant alignments: (Bits) Value seq70437 127 9e-25 seq133315 118 5e-22 seq539 118 5e-22 >seq70437 Length=1356 Score = 127 bits (140), Expect = 9e-25 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8419 CCGCACCTTCACCGACCAGCCCATTGCCTTCGTCGGCATCGAGACCAGCGACGGTCGGAT 8478 ||| || ||||||||| || | || | |||||| | ||| |||||| || || Sbjct 456 CCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCAT 397 Query 8479 GCTGGCAACCGACATCGAGTTCAGCGTGCGGACCCCGCCGCTGCCGATGATGTGGACCAA 8538 ||| ||| | |||||||| ||| | | || | | || |||||| |||||||| || Sbjct 396 GCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAA 337 Query 8539 GCAGACCGGCTACGGCCATGAGGACGCCTTCACCGTCGGCGTGCTGGAAAGCGCCCGTGT 8598 ||||||||||| ||| || || |||||| ||| |||||||| | ||| ||| ||||| Sbjct 336 GCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGT 277 Query 8599 CGACGGCGACAAGGTGCTGGGGTCCGGCTACTGGCTGAACACCACCGAGGCCGACGAGGC 8658 |||||||||| | || | |||||| || ||| ||||| |||||| ||||||| Sbjct 276 CGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGC 217 >seq133315 Length=1321 Score = 118 bits (130), Expect = 5e-22 Identities = 191/274 (70%), Gaps = 3/274 (1%) Strand=Plus/Minus Query 15217 GCAGGACAACGCCGAGGGCAAGGAATGCTTCTCGGACCGCACGCCGCCCGAGCGCCGCTG 15276 |||||| ||||| |||| ||| ||| || | |||||||| |||||||||||| || Sbjct 868 GCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTG 809 Query 15277 GTACACCCCGGCCCTGGAGCTGTGCAACGTGAACACCGGTCTGCTGACCATGTTCACCGG 15336 |||| || | |||| |||||| |||||| ||| ||| | |||||| ||| || Sbjct 808 GTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGC 749 Query 15337 CTGGGAGTCGGTGCTTGACGCCAACGACCTGCCCGTGGGCTACCGCGACCAGAAGGAAAT 15396 ||| || || | ||| ||| | | | || |||| ||||||||||||| | Sbjct 748 GTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGT 689 Query 15397 CGAAACCGACTACGGCATCGCGCTGGAGCTGTGGACAGCCGGTAAGTCCGACGAGGACTG 15456 |||| | |||||||| | || ||||| | ||||| | ||| ||| ||||||| || || Sbjct 688 CGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTG 629 Query 15457 CGCCGACATTCCCACCAGTGACGCGGTGTTCGCC 15490 | | || |||||| | |||| | |||||| Sbjct 628 CCC---CACCCCCACCGGCGACGATATTTTCGCC 598 >seq539 Length=1209 Score = 118 bits (130), Expect = 5e-22 Identities = 289/432 (67%), Gaps = 22/432 (5%) Strand=Plus/Minus Query 9004 CGACGGGCACATCTTCGGTCACCTGGCGTGCTTCGGTGCGTGCCACCGCAGCATCCAGGC 9063 ||| || | |||| ||| ||||| || |||||||| || ||||| | || | Sbjct 1028 CGAGGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGA 969 Query 9064 TGAGTGCGTGGTGGCACCGCGCAGCCGCACCGGCTACAGCATGTTCCACACCAGCCCGGC 9123 ||||||| |||||| | | || ||||||||| | ||||||||| ||| | Sbjct 968 CCAGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACC 909 Query 9124 CGTGCGCCTGGACGACGGCACCAGCCTGCCGGTGGGACGCCTCACCGTGGGCAGTGGCCA 9183 ||| || ||| |||| | | || || || || | ||||||||||||| || || Sbjct 908 GGTGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCA 849 Query 9184 CGC--GCCCGACCACGTGAGCGGCCAGGTGGCGGCGGCGCACTACGACACCGCCGGTACC 9241 || | ||| | | || ||| | || || || |||||||||| | |||| ||| Sbjct 848 TGCCGGGTCGA--AAGCCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACC 791 Query 9242 TGCTTCGCGCTGGTGCGCGTGGGTGAGGACGCACACGGCATCTGGTTCTCCGGCGTGGCC 9301 |||||||| || || |||| || || |||| ||||||||||||| | || ||||||||| Sbjct 790 TGCTTCGCCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCC 731 Query 9302 GCGCCCTGGGCCACCGCCGAACAGATCGAAA---TG------GGCCTGGCCGCACCGCTC 9352 || ||||| ||| | |||| ||||| || || || || ||||| | Sbjct 730 GC-ACCTGG--CACTG----ACAG--CGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTG 680 Query 9353 AGCGGTGACTGGCGTGACTTCGGCCAGGGCCTGGAGCTGGTGGCGGCGCTGGCCGTGAAC 9412 ||| || ||||| | ||||| | ||||||| || || || || || |||||| Sbjct 679 TCCGGGGATTGGCGGCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAAC 620 Query 9413 ACGCCCGGCTTC 9424 || || || ||| Sbjct 619 ACACCGGGTTTC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 224070500023572