Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022331.2 Length=69309 Score E Sequences producing significant alignments: (Bits) Value seq70437 136 2e-27 seq133315 116 2e-21 seq539 114 6e-21 >seq70437 Length=1356 Score = 136 bits (150), Expect = 2e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9873 TTTACCGACCAGCCCATCGCATTCGTCGGCATCGAGACCAGCGACGGCCGGATGCTGGCC 9932 || |||||| || ||||| | |||||| | ||| |||||| || ||||| || Sbjct 449 TTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCATGCTCGCA 390 Query 9933 AAGGACATCGAGTTCAGCGTGCGCACCCCGCCGCTGCCGATGATGTGGACCAAGCAGACC 9992 ||||||||| ||| | | |||| | || |||||| |||||||| ||||||||| Sbjct 389 TCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAAGCAGACC 330 Query 9993 GGGTATGGCCACGAGGACGCCTTCACGGTGGGCGTCATCGAGAGCGCCCGCGTGGACGGC 10052 || | || ||||| |||||| |||||| ||||||||||| ||| || || |||||| Sbjct 329 GGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGTCGACGGC 270 Query 10053 GACACCATCCGTGGGTCGGGCTACTGGCTCAACACCACCGAGGCCGACGAGGC 10105 ||| |||||| | ||| || || ||||||||| |||||| ||||||| Sbjct 269 GACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGC 217 >seq133315 Length=1321 Score = 116 bits (128), Expect = 2e-21 Identities = 184/263 (70%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 16640 GCAGGACAACGCCGAGGGCAAGGAGTGCTTCACCGACCGGACGCCTCCCGAGCGCCGCTG 16699 |||||| ||||| |||| ||| |||| |||||||||| || || ||||||||| || Sbjct 868 GCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTG 809 Query 16700 GTACACCCCGGCCCTGGAGCTGTGCAACGTGAACACCGGTCTGCTGACCATGTTCACCGG 16759 |||| || | |||| |||||| |||||| ||| ||| | |||||| ||| || Sbjct 808 GTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGC 749 Query 16760 CTGGGAGTCGGTGCTTGACGCCAACGACCTGCCCGTTGGCTACCGCGACCAGAAGGAAAT 16819 ||| || || | ||| ||| | | | || |||| ||||||||||||| | Sbjct 748 GTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGT 689 Query 16820 CGAGACCGACTACGGCATCGCGCTGGAGTTGTGGACGGCAGGTAAGTCCGACGAGGACTG 16879 ||| | |||||||| | || ||||| | ||||| | || ||| ||||||| || || Sbjct 688 CGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTG 629 Query 16880 CGCCGACATCCCCACCACCGACG 16902 | | || ||||||| ||||| Sbjct 628 CCC---CACCCCCACCGGCGACG 609 >seq539 Length=1209 Score = 114 bits (126), Expect = 6e-21 Identities = 324/487 (67%), Gaps = 27/487 (6%) Strand=Plus/Minus Query 10400 CATGTTCGCCGACCCGCAGCTGTCCGGCCCGACGTTGCCCACCATGGACCCCGAGACCGG 10459 |||||||| || || ||| ||| ||||| || |||| ||| ||||| || Sbjct 1079 CATGTTCGAGGATCCTGGGCTCACCGCACCGACCCCGCTATCCATCGACTCCGAG---GG 1023 Query 10460 GCACATGTTCGGTCACCTGGCGTGCTTCGGTGCCTGCCACCGAAGCATC-CAGAGCGAGT 10518 | ||| ||| ||||| || |||||||| || ||||| | || | || | ||| Sbjct 1022 CCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACC-AGT 964 Query 10519 GCGTGGTGGCCCCGCGCAGCCGCACCGGTTACAGCATGTTCCACACCAGCCCGGCCGTGC 10578 |||| ||| || | | || ||||| ||| | ||||||||| ||| | ||| Sbjct 963 GCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGA 904 Query 10579 GCCTGGACGACGGCACCAGCCTGCCGGTGGGACGGCTCACTGTGGGCAGTGGCCACGC-- 10636 || ||| |||| | | || || || || ||||||| ||||||| || || || Sbjct 903 TGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCG 844 Query 10637 GCCCGACCACGTGAGCGGCCAGGTAGCAGCGGCGCACTACGACACCGCCGGTACCTGCTT 10696 | ||| | | || ||| | || || || |||||||||| | |||| |||||||| Sbjct 843 GGTCGA--AAGCCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTT 786 Query 10697 CGCGCTGGTGCGCGTGGGCGAGGACAAGCACGGCATCTGGTTCAGCGGTGTGGCGGCACC 10756 ||| || || |||| ||||| ||| | |||||||||||| | || ||||| ||| | Sbjct 785 CGCCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCA-C 727 Query 10757 CTGGGCCACGCCCGAACAGATCGAAA---TG--GGCCTGTC-CGCG---CCGCTGTCCGG 10807 ||| || | |||| ||||| || |||| | | |||| || ||||||| Sbjct 726 CTG------GCACTGACAG--CGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGG 675 Query 10808 CGACTGGCGGGACTTCGGCCAGGGCCTGGAGCTGGTGGCGGCGCTGGCTGTGAACACGCC 10867 || |||||| | ||||| | ||||||| || || || || || |||||||| || Sbjct 674 GGATTGGCGGCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACC 615 Query 10868 GGGCTTC 10874 ||| ||| Sbjct 614 GGGTTTC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221111493890520