Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022983.1 Length=68196 Score E Sequences producing significant alignments: (Bits) Value seq133315 262 2e-65 seq539 167 1e-36 seq70437 131 7e-26 >seq133315 Length=1321 Score = 262 bits (290), Expect = 2e-65 Identities = 527/771 (68%), Gaps = 18/771 (2%) Strand=Plus/Minus Query 16395 CGTGCCACCAAGGTCAACTCTTGCGGGCTGCCGATCAGCGGTCCCGCCAACCGGATCGTG 16454 || ||||||||||||||| ||||||||| || || || ||| |||| ||| || Sbjct 987 CGCGCCACCAAGGTCAACAGTTGCGGGCTCCCCGTCGAGGGCGCCGGCAACT--ATC-TG 931 Query 16455 ACC---GACGGCTTCGTCACCTTCAACATCGACCCGGTGCTCAAGGACGCGGAGGAGCTG 16511 ||| ||||| ||||| | ||||| || ||| | ||||||||| | ||| | Sbjct 930 ACCACCGACGGTTTCGTGTCGTTCAAAATGTCCCCCAACATGAAGGACGCGAACGAGATC 871 Query 16512 TCGCAGACCAACGCGGCCGGTAAGGAATGCGTCACCGACCGCACTCCGCCGGAGCGGAAG 16571 |||| |||||| || ||| ||| ||||||||||||| ||||| ||||| ||| Sbjct 870 GAGCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAG 811 Query 16572 TGGTACAACATCCAGGCCGAACTCTGCGGTGTCAACACCGGCCTGATCACCCTGCTCAAC 16631 |||||| || || || | || ||||| || ||| ||| ||||||||| |||||||| Sbjct 810 TGGTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAAC 751 Query 16632 GGGTGGCCGCAGATCCTCGACTACGACGACAACCCGATCGGTTTCCGCGACCAGAAGGAA 16691 | |||| |||| |||||||| | | | || || |||| ||||||||||||||| Sbjct 750 GCGTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGC 691 Query 16692 GTGGACGACCAGTTCGGCGTCGCCTTCGAGGTCTGGACCGGCGGCAAGTCGGACGACGAC 16751 || || | | ||| || ||| | || ||||||||||||||||| | |||||||| Sbjct 690 GTCGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGAT 631 Query 16752 TGCCCGACCCCGACCTCGGACTCGATCTTCTCGGCTC--CGTCGTCCGGCCTCCAGTACG 16809 ||||| ||||| || ||| |||| || ||| | | |||||||| |||| | Sbjct 630 TGCCCCACCCCCAC--CGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATG 573 Query 16810 GCTACTTCCTGATCGCGGGCAAGGAGTTCACGCTCGGCGCGATCAATATCGGCGCGCAGG 16869 | ||| | |||| ||||| |||||||||||||||| || | | ||| | | Sbjct 572 GGTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACATTGAGGTACAGGCGGACG 513 Query 16870 TGTCGACGTTCACGCTGTCCGGAATCTCGATCGCCATCCCGCATTGGGGACGGGGTCCGT 16929 | | | ||||| || || || ||| ||||| |||||| ||||| || || |||| Sbjct 512 TCGCCAACTTCACCCTCTCGGGCATCAGCATCGCTGGCCCGCAGTGGGGTCGTGGCCCGT 453 Query 16930 ACAACGTCGCCGCCACCGACGCGTCCGGCACTCCCGGCCGTCTGCTGGAGCCGATGGACG 16989 || || | ||||| ||| | | ||| | ||||||||| | || ||| | Sbjct 452 GGAATGTTGTCGCCATCGATGACGACAACACGGCTGGCCGTCTGATCACTCCTCCGGATG 393 Query 16990 AGGACTCTCACTTCGCGGTGTTCCGTACGCCGGTCGCGCCGCCCGAGGTCACCAACGGCG 17049 | ||| || ||| || || || ||| |||||||||| || ||| || | Sbjct 392 ATGACCAGCATTTCATTCTGCAGCGCACCCCGATCGCGCCGCCGGA-GTCGACA----CC 338 Query 17050 GTGAGCCTCTGCCGCTGGACATCCTCGGGAAGTTCGTCGCGCCGAACTACTACTTCGGCG 17109 || |||| | |||||||||| ||| | |||| | ||| ||| ||||||||| | Sbjct 337 GTCCGCCTGCG-AGCTGGACATCACCGGCACGTTCCAGGATCCGGACTTCTACTTCGGTG 279 Query 17110 GATCCAGCGG-CGAACCGGCTGCGGACGTGGCACCGGACCAGGACGAGGGC 17159 | || | || | ||||||||| || ||||| ||||| ||| |||| || Sbjct 278 G-GCCGGAGGATGCACCGGCTGCTGATGTGGCGCCGGATCAGCCCGAGTGC 229 >seq539 Length=1209 Score = 167 bits (184), Expect = 1e-36 Identities = 327/478 (68%), Gaps = 13/478 (3%) Strand=Plus/Minus Query 9899 TGTTCTCGGATCCCAAGCTGACCGAGCCGACGCGCTCCA-CCATGGATCCCGAGACCGGA 9957 ||||| |||||| ||| |||| ||||| | | | | |||| || ||||| || Sbjct 1077 TGTTCGAGGATCCTGGGCTCACCGCACCGACCC-CGCTATCCATCGACTCCGAG---GGC 1022 Query 9958 CGGATCTACGGGCACATCGCGTGCTTCGGCGCGTGCCACCGGTCGATCCAGGCCCAGTGC 10017 || ||| ||| ||| |||| |||||||| || ||||| | | || | ||||||| Sbjct 1021 CGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAGTGC 962 Query 10018 CTCATGGCTCCGAAGTCGCCGACGAACTACTCGCAGTTCCTCACGTCGCCGCCGGTCCTG 10077 | ||| || | || | ||| |||| | || |||| ||| | || ||||| || Sbjct 961 GTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGATG 902 Query 10078 CTCGACAATGGCGAACGGCTCCCCGTCGGACGNNNNNNNNNNGGCACCGGTCACGCTCC- 10136 |||||||| || || || ||||||||||| | |||||||| || || Sbjct 901 CTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGG 842 Query 10137 -CGAGAACCTGTCCGGCGGTCCGGCCGTCGCGCACTACGACAACACCGGCACGTGCTTCG 10195 ||| | || ||| | | | |||| || |||||||||||||||||||| ||||||| Sbjct 841 TCGAAAGCCC--CCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTTCG 784 Query 10196 CGCTCGTCAACGTCGGCGAGGACGAACACGGGATCTGGTTCTCCGGCGTCGCGGCACCGT 10255 | |||||| || |||||| ||||||||||| |||||| | || ||||| || ||||| | Sbjct 783 CCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCACC-T 725 Query 10256 GGGCC--ACGCCGGAGCAGATCGAGATGGGCCTCTCCGCACCCCTGTCGGGCGACTGGCG 10313 || | || || | | | || || ||| | |||||| |||| || || ||||| Sbjct 724 GGCACTGACAGCGAAAC-CCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGATTGGCG 666 Query 10314 GGACTTCGGTCACGGCCTCGACCTGGTGGCGGCGCTCGCCGTGAACACGCCCGGTTTC 10371 | | |||| | | | || || || || || ||||| |||||||| || |||||| Sbjct 665 GCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTC 608 >seq70437 Length=1356 Score = 131 bits (144), Expect = 7e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 9354 CCGGACGTTCACGAACGCCACGCTCGCGATCCTCGGTACGCCGACCAGCGACGGCCGGAT 9413 |||||||||||| ||||||| |||| | ||||| || | ||| |||||| || || Sbjct 456 CCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCAT 397 Query 9414 GCTCGACAAGGACATCAAGCTCTCGTTCCGCGACTTCCCTCTGCCGGTCATGTGGTGCAA 9473 ||||| ||||||| | || | |||||| |||||| |||||| | |||||| || Sbjct 396 GCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAA 337 Query 9474 GCAGACGACCGGCGGGCACACCGATGCGTACACCGTCGGCGTGCTGGAATCCGCCGAGGT 9533 |||||| | ||| ||| | | || ||||| |||||||| | ||| |||| || Sbjct 336 GCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGT 277 Query 9534 CAAGGGCAACAAGGTCAAGGGGTCCGGCTACCTGCTCAACACCGCCGAGGCCGACGAGGC 9593 | | ||| || || | |||||| || ||||||||||| | |||||| ||||||| Sbjct 276 CGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGC 217 Query 9594 GGCAGAGCAGCTTGCCCATGGTGTCAC 9620 || || ||| | | || || ||||| Sbjct 216 TGCCGACCAGATCGAGCACGGCGTCAC 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 217558771316532