Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023554.1 Length=70841 Score E Sequences producing significant alignments: (Bits) Value seq70437 167 1e-36 seq133315 147 1e-30 seq539 131 8e-26 seq125646 87.8 8e-13 >seq70437 Length=1356 Score = 167 bits (184), Expect = 1e-36 Identities = 520/788 (66%), Gaps = 34/788 (4%) Strand=Plus/Minus Query 8913 CTGGAGAAGGTGTGGATCGCCACTATCGACGGCAAGACGCGGCATACGCACTTTGCCGCC 8972 ||| |||| ||||||| ||| ||||||| ||||| || | |||| || ||| Sbjct 896 CTGCAGAAAACGTGGATCTGCACGCTCGACGGGAAGACTCGCGCCGCCCACTACGCGGCC 837 Query 8973 GACGGTCAGCGCGCACCCCTCGCCGGTAAGTTCACGGTCGGTGCCGCGCTGCTGGACTTC 9032 ||||| ||||| | | | ||| ||| |||||| || || | | | |||| | Sbjct 836 GACGGGCAGCGGGTAGCGGTCGACGGCAAGTTCGATGTGGGCGGCTACGAGATGGAAGGC 777 Query 9033 CCAGCGGACCCCGCTGGCCCGGCGGCAGAGGT---GAAGAACTGCCGCTGCCGGGTCGGC 9089 || | || || | |||| || | ||| | || |||||||||||| ||| | Sbjct 776 CCGGGAGATCC-GAACGCCCCGC--CTGAGCTTTCGATCAACTGCCGCTGCGCGGTGGCT 720 Query 9090 ATCCTGGCACCGGACGAGGAGCTGCCAGATGAGGTCGACCGGCACACCGAGCGCCTTAAC 9149 | || |||||||| || || |||| ||| | |||||||||||||| ||| | Sbjct 719 GTTCTCGCACCGGATGAACCTCTCCCAGCAGAGATGGACCGGCACACCGAACGCGGCCCC 660 Query 9150 GGGCGCGACAGCGTGCAAGTCAACCGGCAGGGTAGCCAGTCCGACGAGATTGCCCGCCGG 9209 || | || ||| |||| |||||| || | || ||||||||||| ||| | ||| Sbjct 659 GGCGACTCCACCGT-CAAG--AACCGGTCCGGCACACAATCCGACGAGATCGCCAGACGG 603 Query 9210 GCCAAGCAGGGCACGATCCGCGCCCGCGACGACGAGGACGGCGTAGGTCGAACGGCCAGC 9269 ||| | | |||| ||||| |||||||||||| ||||| | || | ||| Sbjct 602 GCCGACGACGGCAACATCCGAGCCCGCGACGACCCCGACGGTATCGGGC--ACGTA---- 549 Query 9270 GCCGCACCGAGCGAACAGGAGTACGACATGCCGCAGCCGACCCCGGCCGACACCGCCGCA 9329 |||||| | | |||| |||| | |||| |||||| | | |||| | || Sbjct 548 GCCGCATCTATCGAA--GGAGCAAC-CATG-----GCCGACGAC--CAGACA--GACGAT 501 Query 9330 GCACTGGCCGCAGAAGCCGACGACGATGC--CGCCGAG--ACGTTCCGCGTGTTCACCGA 9385 |||| | || | | || || |||| || || | || | ||| ||||||||| Sbjct 500 GCACCGAACGACGCGCCGGAAGATAATGCTCCGGCGGGTGAC-TACCGGACGTTCACCGA 442 Query 9386 CCAGCCCATCGCGTTCGTCGGCATCGAGACCAGCGATGGCCGGATGCTGGCCACCGACAT 9445 | || |||| | |||||| | ||| ||| || || ||||| || | ||||| Sbjct 441 CGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCATGCTCGCATCGGACAT 382 Query 9446 CGAGTTCAGCGTGCGCACCCCGCCGCTGCCGATGATGTGGACCAAGCAGACCGGGTATGG 9505 ||| ||| | | |||| | || |||||| |||||||| ||||||||||| | || Sbjct 381 CGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAAGCAGACCGGCTTCGG 322 Query 9506 CCATGAGGACGCCTTCACGGTGGGCGTCATCGAGAGCGCCCGCGTGGACGGCGACACCAT 9565 || || |||||| |||||| ||||||||||| ||| || || ||||||||| |||| Sbjct 321 ACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGTCGACGGCGACGCCAT 262 Query 9566 CCGTGGGTCCGGCTACTGGCTGAACACCACCGAGGCCGACGAGGCTTTCAACGAGGCCAG 9625 || | |||||| || ||| ||||| |||||| |||||||| | || || | Sbjct 261 CCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGCTGCCGACCAGATCGA 202 Query 9626 CCACAAGGTCAGCCGACCGAGCGTCGACCT-GGCGCGCACCGAGTGGAAGCTGACCGACG 9684 ||| |||| | | || || ||||| | || ||| ||||||| | |||||| Sbjct 201 GCACGGCGTCACCGGGCCCAGTGTCGATTTGGGTGCG-GTCGAGTGGGTGACCGCCGACG 143 Query 9685 AGGACGGC 9692 || ||||| Sbjct 142 AGAACGGC 135 >seq133315 Length=1321 Score = 147 bits (162), Expect = 1e-30 Identities = 238/342 (70%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 16776 GCAGGACAACGCCGAGGGCAAGGAGTGCTTCACCGACCGGACGCCGCCCGAGCGCCGCTG 16835 |||||| ||||| |||| ||| |||| |||||||||| || |||||||||||| || Sbjct 868 GCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTG 809 Query 16836 GTACACCCCGGCCCTGGAGCTGTGCAACGTGAACACCGGTCTGCTGACCATGTTCACCGG 16895 |||| || | |||| |||||| |||||| ||| ||| | |||||| ||| || Sbjct 808 GTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGC 749 Query 16896 CTGGGAGTCGGTGCTTGACGCCAACGACCTGCCCGTTGGCTACCGCGACCAGAAGGAAAT 16955 ||| || || | ||| ||| | | | || |||| ||||||||||||| | Sbjct 748 GTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGT 689 Query 16956 CGAGACCGACTACGGCATCGCGCTGGAGCTGTGGACCAGCGGCAAGTCCGACGAGGACTG 17015 ||| | |||||||| | || ||||| | |||||| |||||||| ||||||| || || Sbjct 688 CGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTG 629 Query 17016 CGCCGAAATCCCCACCAGCGACGCCGTGTTCGCCGCTGCCGGGTCCGGCCGTAGCTACGG 17075 | || | ||||||| |||||| | |||||| | | ||||||| | || || Sbjct 628 CCCC---ACCCCCACCGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATGG 572 Query 17076 CTACTTCCTGTTCGGCGGCACCGAGTGGACCCCTGGTGACAT 17117 ||| | ||| | |||||||||| || | || ||||| Sbjct 571 GTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACAT 530 >seq539 Length=1209 Score = 131 bits (144), Expect = 8e-26 Identities = 289/426 (68%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 9963 GGACGCATCTTCGGTCACCTGGCGTGCTTCGGTGCGTGCCACCGCAGCATCCAGGCTGAG 10022 || |||||| ||| ||||| || |||||||| || ||||| | || | || Sbjct 1024 GGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAG 965 Query 10023 TGCGTGGTGGCCCCGCGCAGCCGCACCGGGTACAGCATGTTCCACACCAGCCCGGCCGTG 10082 ||||| ||| || | | || ||||| ||| | ||||||||| ||| | ||| Sbjct 964 TGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTG 905 Query 10083 CGCCTGGACGACGGCACCAGCCTGCCGGTGGGACGGCTCACTGTGGGCAGCGGCCACGC- 10141 || ||| |||| | | || || || || ||||||| ||||||| ||| || || Sbjct 904 ATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCC 845 Query 10142 -GCCCGACCATGTGAGCGGCCAGGTAGCGGCAGCGCACTACGACACCGCCGGTACCTGCT 10200 | ||| | | || ||| | || ||||| |||||||||| | |||| ||||||| Sbjct 844 GGGTCGA--AAGCCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCT 787 Query 10201 TCGCGCTGGTGCGCGTGGGTGAGGACAAGCACGGCATCTGGTTCTCCGGCGTGGCCGCGC 10260 |||| || || |||| || || ||| | |||||||||||| | || ||||||||||| Sbjct 786 TCGCCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGC-A 728 Query 10261 CCTGGGCCACCGCCGAGCAGATCGAAATGGGCCTGTC-CGCG---CCGCTGTCCGGCGAC 10316 ||||| ||| | | ||| | | |||| | | |||| || ||||||| || Sbjct 727 CCTGG--CACTGAC-AGCGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGAT 671 Query 10317 TGGCGTGACTTCGGCCAGGGCCTGGAGCTGGTGGCGGCGCTGGCGGTGAACACGCCGGGC 10376 ||||| | ||||| | ||||||| || || || || ||||||||||| ||||| Sbjct 670 TGGCGGCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGT 611 Query 10377 TTCGCG 10382 ||| || Sbjct 610 TTCCCG 605 >seq125646 Length=2033 Score = 87.8 bits (96), Expect = 8e-13 Identities = 154/222 (69%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 7274 TGGCCATGGGCCTGGACGTGAGCCCCGAGCGGCTGCTGGGCCTGGGCAGCAACAGCAACC 7333 |||||||| |||| | ||| ||||| |||||| |||| ||||| || ||||| Sbjct 290 TGGCCATGTCCCTGAAAGTGTCGCCCGAACGGCTGTTGGGGATGGGCGAACACTCCAACC 231 Query 7334 ACTGGAGCGCCTGGCAGATCGGTGACGAG---GACGTACAGCTGCACATCAAGCCCGTGA 7390 |||||| ||| | | ||| ||||| ||||| || | |||||| || || Sbjct 230 ACTGGACCGCGGCCCTGCTCG---ACGAGACCGACGTCAAGGTACACATCTCCCCACTGT 174 Query 7391 TGGAGGTGCTGTGCCAGGCCATCTACCGCGAGGTGCTGGTGGCCACGCTCAA---GGCCG 7447 ||||| | | ||| | |||||| ||||| || ||| | || | ||| | ||||| Sbjct 173 TGGAGACGATCTGCGATGCCATCACCCGCGTCGTCCTGCGGCCCGCACTCGAACGGGCCG 114 Query 7448 AAGGCATCGACCCCGACAAGTACGTCCTCTGGTACGACGCCA 7489 ||||||| || ||||||||| | ||||||||||||||| Sbjct 113 ---GCATCGATCCTGACAAGTACACCGTCTGGTACGACGCCA 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 226001674468552